Pairwise Alignments

Query, 626 a.a., DNA topoisomerase IV subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 805 a.a., DNA gyrase subunit B from Pseudomonas fluorescens FW300-N2E3

 Score =  376 bits (965), Expect = e-108
 Identities = 223/571 (39%), Positives = 332/571 (58%), Gaps = 23/571 (4%)

Query: 5   YNAGAIEVLNGLEPVRRRPGMYTDTTRP----NHLGQEVIDNSVDEALAGYASKIQVILH 60
           Y++ +I+VL GL+ VR+RPGMY   T      +H+  EV+DNS+DEALAG+   I +I+H
Sbjct: 7   YDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDISIIIH 66

Query: 61  ADQSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGISVVN 120
            D+S+ V D+GRG+PVD+H EE VS  E+I+  LHAGGKF + +Y+ SGGLHGVG+SVVN
Sbjct: 67  PDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN 126

Query: 121 ALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDSPNFS 180
           ALS+ + + VRR G+++E  + HG     + + G  G  +TGT +HF P  + F + +FS
Sbjct: 127 ALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGESG--STGTQIHFKPSAETFKNIHFS 184

Query: 181 VSRLINNLRAKAVLCPGLEIIFTDKVNNNEHRWLYEDGLKDYLAEGVKGYTLLPEEPFTG 240
              L   +R  + L  G+ I+  D+ +  E  + YE GL+ ++      Y    + P   
Sbjct: 185 WDILAKRIRELSFLNSGVGIVLKDERSGKEELFKYEGGLRAFVE-----YLNTNKTPVNQ 239

Query: 241 --EFTAQTE---AATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMREFC 295
              F  Q E       A+ W     E +   + N IP   GGTH+ G R  L   +  + 
Sbjct: 240 VFHFNVQREDGIGVEIALQWNDSFNENLL-CFTNNIPQRDGGTHLVGFRSALTRNLNTYI 298

Query: 296 EFRNLLPR-GVKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSGVVKDAF 354
           E   L  +  V  TG+D  +    ++S+K+ DP+F+ QTK++L S +    V   +   F
Sbjct: 299 EAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYF 358

Query: 355 SLWLNEKPQLAEQLAEVCI--ANAHSRMRASKKVVRKKIASGPA-LPGKLTDCTVQDLNR 411
           S +L E P  A+ +    I  A A    R ++++ R+K A   A LPGKL DC  +D   
Sbjct: 359 SDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPAL 418

Query: 412 TELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISVAL--G 469
           +EL+LVEGDSAGGSAKQ R+R+ QA++PL+GKILN  +   D++++SQEV  +  AL  G
Sbjct: 419 SELYLVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCG 478

Query: 470 IDPDSDNLEALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPPLYRI 529
           I  D  N++ LRY  + I+ DAD DG HI TLL   F R    L++ G++Y+A PPLY++
Sbjct: 479 IGRDEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPPLYKV 538

Query: 530 DCGKEVFYALDDQEKEGVLERLSQKKAKVNV 560
             GK+  Y  DD   E  + + + + A +++
Sbjct: 539 KKGKQEQYIKDDDAMEEYMTQSALEDASLHL 569



 Score = 66.2 bits (160), Expect = 5e-15
 Identities = 32/77 (41%), Positives = 53/77 (68%), Gaps = 1/77 (1%)

Query: 544 KEGVLERLSQKKAKVNVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDAEATDEMMDM 603
           KE +   +++   +  +QR+KGLGEMNP QL ETTMDP +RR++++TI+DA   D++ + 
Sbjct: 721 KEALEWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPGSRRMLKVTIEDAIGADQIFNT 780

Query: 604 LLGKKRADDRRAWLQRN 620
           L+G    + RR +++ N
Sbjct: 781 LMG-DAVEPRRDFIESN 796