Pairwise Alignments

Query, 626 a.a., DNA topoisomerase IV subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 804 a.a., DNA gyrase, B subunit from Pseudomonas stutzeri RCH2

 Score =  374 bits (960), Expect = e-108
 Identities = 226/569 (39%), Positives = 332/569 (58%), Gaps = 20/569 (3%)

Query: 5   YNAGAIEVLNGLEPVRRRPGMYT----DTTRPNHLGQEVIDNSVDEALAGYASKIQVILH 60
           Y++ +I+VL GL+ VR+RPGMY     D T  +H+  EV+DNS+DEALAG+ S I + +H
Sbjct: 7   YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSDISITIH 66

Query: 61  ADQSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGISVVN 120
            D+S+ V D+GRG+PVDIH EE VS  E+I+  LHAGGKF + +Y+ SGGLHGVG+SVVN
Sbjct: 67  TDESITVRDNGRGIPVDIH-EEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN 125

Query: 121 ALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDSPNFS 180
           ALS+ + + +RR+G+V+E  + HG     L   G     ++GT +HF P  + F + +FS
Sbjct: 126 ALSEELMLTIRREGKVWEQLYRHGVPQAPLAPVGETD--SSGTQIHFKPSAETFQNIHFS 183

Query: 181 VSRLINNLRAKAVLCPGLEIIFTDKVNNNEHRWLYEDGLKDYLAEGVKGYTLLPEEPFTG 240
              L   LR  + L  G+ I+  D+    E  + YE GL  ++A      T + E     
Sbjct: 184 WDILAKRLRELSFLNSGVGIVLRDERTAKEELFKYEGGLSAFVAYLNTNKTPVNE---VF 240

Query: 241 EFTAQTEAATW---AVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMREFCEF 297
            F  Q +       A+ W     E I   + N IP   GGTH+ G R  L   +  + E 
Sbjct: 241 HFNVQRDDGVGVEVALQWNDSFNENIL-CFTNNIPQRDGGTHLAGFRSALTRNLNSYIEQ 299

Query: 298 RNLLPRG-VKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSGVVKDAFSL 356
             L  +  +  TG+D  +    ++S+K+ DP+F+ QTK++L S +    V   +   F+ 
Sbjct: 300 EGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKHFAD 359

Query: 357 WLNEKPQLAEQLAEVCI--ANAHSRMRASKKVVRKKIASGPA-LPGKLTDCTVQDLNRTE 413
           +L E P  A+ +    I  A A    R ++++ R+K A   A LPGKL DC  +D   +E
Sbjct: 360 FLLEHPSEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSE 419

Query: 414 LFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISVAL--GID 471
           L++VEGDSAGGSAKQ R+R+ QA++PL+GKILN  +   D++++SQEV  +  AL  GI 
Sbjct: 420 LYIVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIG 479

Query: 472 PDSDNLEALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPPLYRIDC 531
            D  N++ LRY  + I+ DAD DG HI TLL   F R    L++ G+VY+A PPLY++  
Sbjct: 480 RDEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYVYIAQPPLYKVKR 539

Query: 532 GKEVFYALDDQEKEGVLERLSQKKAKVNV 560
           GK+  Y  DD+  E  L + + + A ++V
Sbjct: 540 GKQEQYIKDDEAMEEYLTQSALEDASLHV 568



 Score = 67.0 bits (162), Expect = 3e-15
 Identities = 32/62 (51%), Positives = 47/62 (75%), Gaps = 1/62 (1%)

Query: 559 NVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDAEATDEMMDMLLGKKRADDRRAWLQ 618
           +VQR+KGLGEMNP QL ETTMDPN RR++++TI+DA   D++ + L+G    + RR +++
Sbjct: 735 SVQRYKGLGEMNPDQLWETTMDPNVRRMLKVTIEDAIGADQIFNTLMG-DAVEPRRDFIE 793

Query: 619 RN 620
            N
Sbjct: 794 TN 795