Pairwise Alignments

Query, 626 a.a., DNA topoisomerase IV subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 827 a.a., DNA gyrase subunit B from Azospirillum brasilense Sp245

 Score =  351 bits (901), Expect = e-101
 Identities = 237/647 (36%), Positives = 356/647 (55%), Gaps = 36/647 (5%)

Query: 3   EQYNAGAIEVLNGLEPVRRRPGMYTDTTRP----NHLGQEVIDNSVDEALAGYASKIQVI 58
           + Y A +I VL GL+ VR+RPGMY   T      +H+  EV+DN++DEALAGY   + V 
Sbjct: 13  QDYGAESITVLRGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGYCDAVVVQ 72

Query: 59  LHADQSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGISV 118
           L+AD S+ V D+GRG+P DIH EE VS  E+++ +LHAGGKF+  +Y+ SGGLHGVG+SV
Sbjct: 73  LNADGSVTVRDNGRGIPTDIHSEEGVSAAEVVMTQLHAGGKFNQNSYKVSGGLHGVGVSV 132

Query: 119 VNALSKRVEVAVRRDGQVYEIAFEHG---DKVTELTVT-----GTCGRRN-TGTSVHFWP 169
           VNALS+ +E+ + R+G+ + + F HG   +++ ++        G  G++  +GT V F P
Sbjct: 133 VNALSETLELRIWRNGREWFMRFRHGVADERLADIGAAPMVDDGNGGQKPLSGTEVTFLP 192

Query: 170 DTKYFDSPNFSVSRLINNLRAKAVLCPGLEIIFTDK--VNNNEHRWLYEDGLKDYLAEGV 227
               F +  F  + L + LR  A L  G+ ++ TD   V        YE GL+ ++    
Sbjct: 193 SKDTFTNTEFDFATLEHRLRELAFLNSGVRLVLTDARGVEPKVQDLHYEGGLEAFVNWLD 252

Query: 228 KGYTLLPEEPFTGEFTAQTE-----AATWAVIWLPEGGELITESYVNLIPTAQGGTHVNG 282
           +    L +   + +    TE         ++ W     E  T  + N IP   GGTH+ G
Sbjct: 253 RSKVPLHKPAISIKAERPTEHGGVVTVECSLQWNDSYHE-TTLCFTNNIPQKDGGTHLAG 311

Query: 283 LRQGLLDAMREFCEFRNLLPR-GVKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQ 341
            R  L  A+  +     +  +  V L+G+D  +    VLS+K+ DP+F+ QTK++L S +
Sbjct: 312 FRAALTRAINNYANESGIAKKEKVNLSGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSE 371

Query: 342 SAAFVSGVVKDAFSLWLNEKPQLAEQLAEVCI--ANAHSRMRASKKVVRKKIASGPA-LP 398
               V  VV +  + +  E P  A+++ +  +  A A    R ++++ R+K A   A LP
Sbjct: 372 VRPVVEAVVGECLAQYFEEHPADAKRVVQKVVEAAAAREAARKARELTRRKGALDIASLP 431

Query: 399 GKLTDCTVQDLNRTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLAS 458
           GKL DC  +D   +ELF+VEGDSAGGSAKQ R R+FQA++PLRGKILN      D++L+S
Sbjct: 432 GKLADCQERDPALSELFIVEGDSAGGSAKQGRSRQFQAILPLRGKILNVERARFDKMLSS 491

Query: 459 QEVHDISVAL--GIDPDSDNLEALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKA 516
            E+  +  AL  GI  D  N +  RY K+ I+ DAD DG HI TLL   F R    L++ 
Sbjct: 492 AEIGTLIAALGTGIGRDEFNPDKTRYHKIIIMTDADVDGSHIRTLLLTFFFRQMPELIER 551

Query: 517 GHVYVAMPPLYRIDCG--KEVFY----ALDDQEKEGVLERLSQKKAKVNVQRFKGLGEMN 570
           G++Y+A PPLYRI  G  KE +     AL++   E  L  LS + A  ++   + L EM 
Sbjct: 552 GYLYIAQPPLYRIKRGNAKERYLKDDRALEEYLIEAALGDLSVRPADGSLLNGEPLREMV 611

Query: 571 PLQLRETTMDPNT--RRLVQLTIDDAEATDEMMDMLLGKKRADDRRA 615
             Q R   +   T  R+   L++ ++ A    + + L +  A  ++A
Sbjct: 612 E-QARGGRLHIETLARKAGNLSVVESAAVSGALSVALSQDTAQAQQA 657



 Score = 60.1 bits (144), Expect = 4e-13
 Identities = 29/63 (46%), Positives = 43/63 (68%), Gaps = 1/63 (1%)

Query: 558 VNVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDAEATDEMMDMLLGKKRADDRRAWL 617
           V +QR+KGLGEMNP QL ETT+DP  R L+Q+ ++ A+  +E+   L+G    + RR ++
Sbjct: 757 VTIQRYKGLGEMNPDQLWETTLDPTKRSLLQVKVNHADQAEEVFSTLMG-DIVEPRREFI 815

Query: 618 QRN 620
           Q N
Sbjct: 816 QEN 818