Pairwise Alignments

Query, 626 a.a., DNA topoisomerase IV subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 814 a.a., DNA gyrase subunit B (EC 5.99.1.3) from Xanthomonas campestris pv. campestris strain 8004

 Score =  345 bits (886), Expect = 3e-99
 Identities = 218/548 (39%), Positives = 302/548 (55%), Gaps = 14/548 (2%)

Query: 5   YNAGAIEVLNGLEPVRRRPGMYT----DTTRPNHLGQEVIDNSVDEALAGYASKIQVILH 60
           Y++  I VL GLE VR+RPGMY     D T  +H+  EV+DNSVDEALAG+A  I V +H
Sbjct: 15  YDSSKITVLRGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVDEALAGHADDIVVKIH 74

Query: 61  ADQSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGISVVN 120
            D S+ V D+GRG+PVDIH EE VS  E+IL  LHAGGKF + +Y+ SGGLHGVG+SVVN
Sbjct: 75  VDGSVAVSDNGRGVPVDIHKEEGVSAAEVILTVLHAGGKFDDNSYKVSGGLHGVGVSVVN 134

Query: 121 ALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDSPNFS 180
           ALS+ + + + RDG  Y+  +  G+    L       +R  GT++ F P  + F    F 
Sbjct: 135 ALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQLEASTKR--GTTLRFKPAVEIFSDVEFH 192

Query: 181 VSRLINNLRAKAVLCPGLEIIFTD-KVNNNEHRWLYEDGLKDYLAEGVKGYTLLPEEPFT 239
              L   LR  + L  G++I   D +       + YE G++ ++    +  T L     +
Sbjct: 193 YDILARRLRELSFLNSGVKIALIDERGEGRRDDFHYEGGIRSFVEHLAQLKTPLHPNVIS 252

Query: 240 GEFTAQTEAATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMREFCEFRN 299
                       A+ W     E +   + N IP   GGTH+ G R  L   +  + E   
Sbjct: 253 VTGEHNGIVVDVALQWTDAYQETM-YCFTNNIPQKDGGTHLAGFRGALTRVLSNYIEQNG 311

Query: 300 LLPRG-VKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSGVVKDAFSLWL 358
           +  +  + LTG+D+ +    VLS+K+ DP F+ QTKE+L S      V          +L
Sbjct: 312 IAKQAKITLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPAVENAFGARLQEFL 371

Query: 359 NEKPQLAEQLAE--VCIANAHSRMRASKKVVRKKIASGPA-LPGKLTDCTVQDLNRTELF 415
            E P  A+ +    V  A A    R ++ + R+K A   A LPGKL DC  +D   +ELF
Sbjct: 372 QENPNEAKAITGKIVDAARAREAARKARDLTRRKGALDIAGLPGKLADCQEKDPALSELF 431

Query: 416 LVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISVAL--GIDPD 473
           +VEGDSAGGSAKQ R+R+ QAV+PLRGKILN      D++LAS +V  +  AL  GI  D
Sbjct: 432 IVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLASDQVGTLITALGTGIGRD 491

Query: 474 SDNLEALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPPLYRIDCGK 533
             N + LRY ++ ++ DAD DG HI TLL   F R    L++ G++Y+ +PPLY++  GK
Sbjct: 492 EYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGK 551

Query: 534 EVFYALDD 541
              Y  DD
Sbjct: 552 SELYLKDD 559



 Score = 63.9 bits (154), Expect = 3e-14
 Identities = 34/70 (48%), Positives = 48/70 (68%), Gaps = 1/70 (1%)

Query: 551 LSQKKAKVNVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDAEATDEMMDMLLGKKRA 610
           L + K    VQRFKGLGEMN  QL ETT++P+TRRL+Q+ I+DA A D++   L+G    
Sbjct: 737 LEEAKRGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAADQIFSTLMGDV-V 795

Query: 611 DDRRAWLQRN 620
           + RR +++ N
Sbjct: 796 EPRRDFIEDN 805