Pairwise Alignments

Query, 626 a.a., DNA topoisomerase IV subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 805 a.a., DNA gyrase subunit B from Pseudomonas syringae pv. syringae B728a

 Score =  372 bits (955), Expect = e-107
 Identities = 220/571 (38%), Positives = 332/571 (58%), Gaps = 19/571 (3%)

Query: 3   EQYNAGAIEVLNGLEPVRRRPGMYTDTTRP----NHLGQEVIDNSVDEALAGYASKIQVI 58
           + Y++ +I+VL GL+ VR+RPGMY   T      +H+  EV+DNS+DEALAG+   I +I
Sbjct: 5   QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDISII 64

Query: 59  LHADQSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGISV 118
           +H D+S+ V D+GRG+PVD+H EE VS  E+I+  LHAGGKF + +Y+ SGGLHGVG+SV
Sbjct: 65  IHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 124

Query: 119 VNALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDSPN 178
           VNALS+ + + VRR G+++E  + HG     + + G     +TGT +HF P  + F + +
Sbjct: 125 VNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGESD--STGTQIHFKPSAETFKNIH 182

Query: 179 FSVSRLINNLRAKAVLCPGLEIIFTDKVNNNEHRWLYEDGLKDYLAEGVKGYTLLPEEPF 238
           FS   L   +R  + L  G+ I+  D+ +  E  + YE GL+ ++       T + E   
Sbjct: 183 FSWDILAKRIRELSFLNSGVGIVLKDERSGKEELFKYEGGLRAFVEYLNTNKTPVNE--- 239

Query: 239 TGEFTAQTE---AATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMREFC 295
              F  Q +       A+ W     E +   + N IP   GGTH+ G R  L   +  + 
Sbjct: 240 VFHFNIQRDDGIGVEIALQWNDSFNENLL-CFTNNIPQRDGGTHLVGFRSALTRNLNNYI 298

Query: 296 EFRNLLPR-GVKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSGVVKDAF 354
           E   L  +  V  TG+D  +    ++S+K+ DP+F+ QTK++L S +    V   +   F
Sbjct: 299 EQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYF 358

Query: 355 SLWLNEKPQLAEQLAEVCI--ANAHSRMRASKKVVRKKIASGPA-LPGKLTDCTVQDLNR 411
           S +L E P  A+ +    I  A A    R ++++ R+K A   A LPGKL DC  +D   
Sbjct: 359 SDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPAL 418

Query: 412 TELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISVAL--G 469
           +EL+LVEGDSAGGSAKQ R+R  QA++PL+GKILN  +   D++++SQEV  +  AL  G
Sbjct: 419 SELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCG 478

Query: 470 IDPDSDNLEALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPPLYRI 529
           I  +  N++ LRY  + I+ DAD DG HI TLL   F R    L++ G++Y+A PPLY++
Sbjct: 479 IGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPPLYKV 538

Query: 530 DCGKEVFYALDDQEKEGVLERLSQKKAKVNV 560
             GK+  Y  DD+  E  + + + + A +++
Sbjct: 539 KKGKQEQYIKDDEAMEEYMTQSALEDASLHL 569



 Score = 67.0 bits (162), Expect = 3e-15
 Identities = 32/77 (41%), Positives = 53/77 (68%), Gaps = 1/77 (1%)

Query: 544 KEGVLERLSQKKAKVNVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDAEATDEMMDM 603
           KE +   +++   +  +QR+KGLGEMNP QL ETTMDP+ RR++++TI+DA   D++ + 
Sbjct: 721 KEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIGADQIFNT 780

Query: 604 LLGKKRADDRRAWLQRN 620
           L+G    + RR +++ N
Sbjct: 781 LMG-DAVEPRRDFIESN 796