Pairwise Alignments

Query, 626 a.a., DNA topoisomerase IV subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 645 a.a., DNA gyrase subunit B from Synechococcus elongatus PCC 7942

 Score =  432 bits (1112), Expect = e-125
 Identities = 255/640 (39%), Positives = 372/640 (58%), Gaps = 24/640 (3%)

Query: 1   MTEQYNAGAIEVLNGLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGYASKIQV 57
           M  +Y A  I+VL GLEPVR+RPGMY  +T P   +HL  EV+DN+VDEALAGY + I V
Sbjct: 1   MANEYGASQIQVLEGLEPVRKRPGMYIGSTGPKGLHHLVYEVVDNAVDEALAGYCNTIDV 60

Query: 58  ILHADQSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGIS 117
            L  D S +V D+GRG+P DIHP+   S +E +L  LHAGGKF    Y+ SGGLHGVG+S
Sbjct: 61  RLLEDGSCQVTDNGRGIPTDIHPQTGKSALETVLTILHAGGKFGGGGYKVSGGLHGVGVS 120

Query: 118 VVNALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYF-DS 176
           VVNALS+ VEV V R+G+ ++  FE G+ + EL V      R  GT V F PD   F ++
Sbjct: 121 VVNALSEYVEVTVWREGKTHQQRFEQGNPIGELQVAPDADDRR-GTQVRFKPDATIFSET 179

Query: 177 PNFSVSRLINNLRAKAVLCPGLEIIFTDK-----VNNNEHR--WLYEDGLKDYLAEGVKG 229
             F    L + L+  A L  G+ I FTD+      N+  H+  + +E G+++Y+A     
Sbjct: 180 TEFDYGTLASRLKELAYLNAGVRIDFTDERLQLTKNHEPHQETYYFEGGIREYVAYMNTD 239

Query: 230 YTLLPEEPFTGEFTAQTEAATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLD 289
              L  E    +          A+ W  +        + N I T  GGTH+ GL+  L  
Sbjct: 240 KQALHSEIIFVQSEKDGVQVEAALQWCVDAYSDNILGFANNIRTIDGGTHIEGLKTVLTR 299

Query: 290 AMREFCEFRN-LLPRGVKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSG 348
            M      RN        L+GE++ +    ++S+K+ DP+F GQTK +L + +    V  
Sbjct: 300 TMNTIARKRNKRKDADNNLSGENIREGLTAIVSVKVPDPEFEGQTKTKLGNTEVRGIVDT 359

Query: 349 VVKDAFSLWLNEKPQLAEQLAEVCIA--NAHSRMRASKKVVRKK-IASGPALPGKLTDCT 405
           +V +  + +L   P +A+ + E  I   NA    R ++++VR+K +     LPGKL DC+
Sbjct: 360 LVGETLTEYLEFHPSVADLILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCS 419

Query: 406 VQDLNRTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDIS 465
            +D   +E+F+VEGDSAGGSAKQ RDR FQA++PLRGKILN  +    ++  + E+  + 
Sbjct: 420 SRDPGESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALI 479

Query: 466 VALGIDPDSDNLEA--LRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAM 523
            ALG+    +  +A  LRY ++ I+ DAD DG HI TLL   F R+ R+L++ G++Y+A 
Sbjct: 480 TALGLGIKGEEFDASQLRYHRIVIMTDADVDGAHIRTLLLTFFYRYQRSLLEQGYIYIAC 539

Query: 524 PPLYRIDCGKEVFYALDDQEKEGVLERLS--QKKAKVNVQRFKGLGEMNPLQLRETTMDP 581
           PPLY+++ G+  +Y  +++E +   ER++   + A   +QRFKGLGEM P QL ETTMDP
Sbjct: 540 PPLYKLERGRNHYYCYNERELQ---ERIATFPENANYTIQRFKGLGEMMPQQLWETTMDP 596

Query: 582 NTRRLVQLTIDDAEATDEMMDMLLGKKRADDRRAWLQRNG 621
            TR + ++ I+DA   D +  +L+G  R   RR +++  G
Sbjct: 597 ETRTMKRVEIEDAAEADRIFTILMG-DRVQPRREFIETYG 635