Pairwise Alignments

Query, 626 a.a., DNA topoisomerase IV subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 811 a.a., DNA gyrase subunit B from Sinorhizobium meliloti 1021

 Score =  400 bits (1029), Expect = e-116
 Identities = 239/572 (41%), Positives = 342/572 (59%), Gaps = 20/572 (3%)

Query: 4   QYNAGAIEVLNGLEPVRRRPGMYTDTTRP----NHLGQEVIDNSVDEALAGYASKIQVIL 59
           +Y A +I+VL GL+ VR+RPGMY   T      +H+  EV+DN++DEALAG+A  + V L
Sbjct: 14  EYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHADIVTVTL 73

Query: 60  HADQSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGISVV 119
           + D S+ V D+GRG+P DIH EE VS  E+I+ +LHAGGKF   +Y+ SGGLHGVG+SVV
Sbjct: 74  NPDGSVTVTDNGRGIPTDIHREEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVV 133

Query: 120 NALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDSPNF 179
           NALS  +++ +RR G+++E++F HG     L VTG  G   TGT V F P  + F +  F
Sbjct: 134 NALSVSLKLKIRRAGKIHEMSFTHGVADGPLKVTGDAG-GETGTEVTFTPSEQTFSNIEF 192

Query: 180 SVSRLINNLRAKAVLCPGLEIIFTDKVNNNEHR--WLYEDGLKDYLAEGVKGYTLLPEEP 237
               L + LR  A L  G+ I+ TDK +++  R   +Y+ GL+ ++A   +    L ++P
Sbjct: 193 EFGTLEHRLRELAFLNSGVRIVLTDKRHSDIRREEMMYDGGLEAFVAYLDRAKKPLVQKP 252

Query: 238 FT--GEFTAQT-EAATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMREF 294
            +  GE    T E A W   W     E +   + N IP   GGTH+ G R  L   +  +
Sbjct: 253 VSIRGEKDGITVEVAMW---WNDSYHENVL-CFTNNIPQRDGGTHMAGFRGALTRQITSY 308

Query: 295 CEFRNLLPR-GVKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSGVVKDA 353
            +   +  +  V LTG+D  +    VLS+K+ DP+F+ QTK++L S +    V  +V +A
Sbjct: 309 ADTSGITKKEKVSLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVESLVNEA 368

Query: 354 FSLWLNEKPQLAEQLAEVCI--ANAHSRMRASKKVVRKKIASG-PALPGKLTDCTVQDLN 410
            S+WL E P  A+ L    +  A A    R ++++ R+K A    +LPGKL DC+ +D  
Sbjct: 369 LSVWLEEHPSDAKILVGKVVEAAAAREAARKARELTRRKGALDISSLPGKLADCSERDPA 428

Query: 411 RTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISVALG- 469
           ++ELFLVEGDSAGGSAKQ R RE QA++PLRGKILN      D++L+SQE+  +  ALG 
Sbjct: 429 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 488

Query: 470 -IDPDSDNLEALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPPLYR 528
            I  D  N + LRY K+ I+ DAD DG HI TLL   F R    L++ GH+Y+A PPLY+
Sbjct: 489 SIGKDEFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLYIAQPPLYK 548

Query: 529 IDCGKEVFYALDDQEKEGVLERLSQKKAKVNV 560
           +  GK V Y  D++  E  L  +  ++A + +
Sbjct: 549 VARGKSVQYLKDEKALEDYLISMGLEEASLEL 580



 Score = 60.5 bits (145), Expect = 3e-13
 Identities = 42/115 (36%), Positives = 61/115 (53%), Gaps = 9/115 (7%)

Query: 508 RHFRAL-VKAGHVYVAMPPLYRIDCGKEVFYALDDQEKEGVLERLSQKKAK-VNVQRFKG 565
           RH   L  +   VY A P L R D  +E+           +L+ +     K + +QR+KG
Sbjct: 695 RHIDQLKARLKEVYGAPPVLRRRDGTQEI------SGPRALLDAIFAAGRKGLTMQRYKG 748

Query: 566 LGEMNPLQLRETTMDPNTRRLVQLTIDDAEATDEMMDMLLGKKRADDRRAWLQRN 620
           LGEMN  QL ETT+DPN R L+Q+ + DA   D +   L+G +  + RR ++Q N
Sbjct: 749 LGEMNAEQLWETTLDPNVRSLLQVKVTDATDADGLFSRLMGDE-VEPRRDFIQEN 802