Pairwise Alignments

Query, 626 a.a., DNA topoisomerase IV subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 686 a.a., DNA topoisomerase IV subunit B from Sinorhizobium meliloti 1021

 Score =  434 bits (1116), Expect = e-126
 Identities = 273/641 (42%), Positives = 372/641 (58%), Gaps = 25/641 (3%)

Query: 5   YNAGAIEVLNGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGYASKIQVILHA 61
           Y+A AIEVL GLEPVRRRPGMY   TD    +HL  EVIDNS+DEA+AG+A+ I V L A
Sbjct: 47  YDASAIEVLEGLEPVRRRPGMYIGGTDEKALHHLFAEVIDNSMDEAVAGHANFIDVNLDA 106

Query: 62  DQSLEVIDDGRGMPVDIHPE-EKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGISVVN 120
           D  L V D+GRG+PV+ HP+    S +E+++  LHAGGKF  K Y+ SGGLHGVG+SVVN
Sbjct: 107 DGYLTVTDNGRGIPVENHPKFPGKSTLEVVMTVLHAGGKFDGKAYETSGGLHGVGVSVVN 166

Query: 121 ALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDS-PNF 179
           ALS  +EV V R+ ++Y   F  G     L   G    R  GT V F PD + F     F
Sbjct: 167 ALSDDLEVEVARNRRLYRQRFSRGIAQGGLEDLGDVHNRR-GTRVRFHPDPQIFGPHARF 225

Query: 180 SVSRLINNLRAKAVLCPGLEIIFT-DKVNNNEHRWL-------YEDGLKDYLAEGVKGYT 231
             +RL    R+KA L  G+EI ++ D     E   +       +  GLKDYLA  +    
Sbjct: 226 EPARLFRMARSKAYLFGGVEIRWSCDPALLPEGSEIPDRAVFHFPGGLKDYLAATLGKEF 285

Query: 232 LLPEEPFTG--EFTAQTEAATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLD 289
            +  E F G  E +    +  WAV W   GG+    SY N IPT +GGTH  GLR  L  
Sbjct: 286 TVTREIFAGKSEKSGGHGSLEWAVTWY--GGDQQIHSYCNTIPTPEGGTHEAGLRIALTK 343

Query: 290 AMREFCEFRNLLPRGVKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSGV 349
            ++ + E      R   +T +DV    A +LS+ +++P+F GQTK++L++ ++   V   
Sbjct: 344 GLKNYAELTQN-KRAAIVTTDDVMISAAGMLSVFIREPEFVGQTKDKLATVEAQRIVENA 402

Query: 350 VKDAFSLWLNEKPQLAEQLAEVCIANAHSRMRA--SKKVVRKKIASGPALPGKLTDCTVQ 407
           ++D F  +L + P  A +L +  +  A  R+R    K+V RK       LPGKL DC   
Sbjct: 403 LRDPFDHYLADNPAEAAKLLDWVVERAEERVRRRKEKEVSRKTAVRKLRLPGKLADCAQN 462

Query: 408 DLNRTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISVA 467
                ELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN      +++ A+Q++ D+  A
Sbjct: 463 TAEGAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLGANQQIGDLVQA 522

Query: 468 LGIDPDSDNLEA-LRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPPL 526
           LG    S   E  LRY ++ I+ DAD DG HIA+LL   F +    L++ GH+Y+A+PPL
Sbjct: 523 LGCGTRSKYREEDLRYERIIIMTDADVDGAHIASLLITFFYQEMPELIRGGHLYLAVPPL 582

Query: 527 YRIDCGKEVFYALDDQEKEGVLERLSQKKAKVNVQRFKGLGEMNPLQLRETTMDPNTRRL 586
           YR+  G +  YA DD  +E ++      + KV + RFKGLGEM P QL+ETTMDP  R L
Sbjct: 583 YRLSQGSKTLYARDDAHREELMRTEFNGRGKVELGRFKGLGEMLPAQLKETTMDPAKRTL 642

Query: 587 VQLTIDDA--EATDEMMDMLLGKKRADDRRAWLQRNGDMAE 625
           +++ IDD   E T + +D L+G K A+ R  ++Q     A+
Sbjct: 643 LKVEIDDVDFEGTRDAVDSLMGTK-AEARFRFIQERAVFAD 682