Pairwise Alignments

Query, 626 a.a., DNA topoisomerase IV subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 628 a.a., DNA topoisomerase IV subunit B (RefSeq) from Shewanella amazonensis SB2B

 Score =  972 bits (2513), Expect = 0.0
 Identities = 471/626 (75%), Positives = 537/626 (85%), Gaps = 2/626 (0%)

Query: 1   MTEQYNAGAIEVLNGLEPVRRRPGMYTDTTRPNHLGQEVIDNSVDEALAGYASKIQVILH 60
           MT  YN+ AIEVLNGLEPV+RRPGMYTDTTRPNHLGQEVIDNSVDEALAG+AS+I VIL 
Sbjct: 1   MTNLYNSDAIEVLNGLEPVKRRPGMYTDTTRPNHLGQEVIDNSVDEALAGHASRIDVILQ 60

Query: 61  ADQSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGISVVN 120
            D SLEVIDDGRGMPVDIHPEE + GVELIL KLHAGGKFSNKNYQFSGGLHGVGISVVN
Sbjct: 61  TDNSLEVIDDGRGMPVDIHPEEGIPGVELILTKLHAGGKFSNKNYQFSGGLHGVGISVVN 120

Query: 121 ALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDSPNFS 180
           ALS+RVE+ VRRD QVY++AFEHGDKV  LTVTGTCGRRNTGT VHFWP+  YFDSPNFS
Sbjct: 121 ALSRRVEITVRRDAQVYDMAFEHGDKVESLTVTGTCGRRNTGTRVHFWPEPSYFDSPNFS 180

Query: 181 VSRLINNLRAKAVLCPGLEIIFTDKVNNNEHRWLYEDGLKDYLAEGVKGYTLLPEEPFTG 240
           +++LI+ L+AKAVLCPGL I FT+K     H W +E GL DYL   V    +LP+EPF G
Sbjct: 181 ITKLIHLLKAKAVLCPGLRIKFTNKQTGEVHEWYFEAGLTDYLKSAVGDAPMLPQEPFVG 240

Query: 241 EFTAQTEAATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMREFCEFRNL 300
            F    EAA WA+ WLPEGGE + ESYVNLIPT  GGTHVNG RQGLL++MREFCEFRNL
Sbjct: 241 SFAGNNEAADWAITWLPEGGEYLAESYVNLIPTPLGGTHVNGFRQGLLESMREFCEFRNL 300

Query: 301 LPRGVKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSGVVKDAFSLWLNE 360
           +PRG+KL+ ED++D+ A++LSIKMQDPQFAGQTKE+LSSRQSAAFVSG+V+DAFSL+LN 
Sbjct: 301 IPRGIKLSPEDIWDKTAFILSIKMQDPQFAGQTKEKLSSRQSAAFVSGIVRDAFSLYLNS 360

Query: 361 KPQLAEQLAEVCIANAHSRMRASKKVVRKKIASGPALPGKLTDCTVQDLNRTELFLVEGD 420
              LAE LAE+CI+NA  RM+A+KKV RKK+ +GPALPGKLTDC+ QD   +ELFLVEGD
Sbjct: 361 HTDLAEMLAEMCISNAQKRMKAAKKVARKKVTAGPALPGKLTDCSGQDPMTSELFLVEGD 420

Query: 421 SAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISVALGIDPDSDNLEAL 480
           SAGGSAKQARDREFQA+MPLRGKILNTWEV A QVLASQEVHDISVA+G DPDSD++  L
Sbjct: 421 SAGGSAKQARDREFQAIMPLRGKILNTWEVEASQVLASQEVHDISVAIGCDPDSDDISEL 480

Query: 481 RYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPPLYRIDCGKEVFYALD 540
           RYGKVCILADADSDGLHIATLLCALF +H+R LV+ GHVY+AMPPL+RID GKEV+YALD
Sbjct: 481 RYGKVCILADADSDGLHIATLLCALFLKHYRVLVERGHVYIAMPPLFRIDIGKEVYYALD 540

Query: 541 DQEKEGVLERLSQ--KKAKVNVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDAEATD 598
           + EK+G+L+R++   KK K  V RFKGLGEMNPLQLRETTMDPNTRRLVQLTIDD++ T 
Sbjct: 541 ESEKQGILDRIAAEGKKGKPQVTRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDSDDTV 600

Query: 599 EMMDMLLGKKRADDRRAWLQRNGDMA 624
            +MDMLL KKR+ DR+ WL+  GD+A
Sbjct: 601 ALMDMLLAKKRSGDRKTWLETKGDLA 626