Pairwise Alignments

Query, 626 a.a., DNA topoisomerase IV subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 805 a.a., DNA topoisomerase (ATP-hydrolyzing) (RefSeq) from Shewanella amazonensis SB2B

 Score =  368 bits (945), Expect = e-106
 Identities = 214/547 (39%), Positives = 316/547 (57%), Gaps = 12/547 (2%)

Query: 5   YNAGAIEVLNGLEPVRRRPGMYT----DTTRPNHLGQEVIDNSVDEALAGYASKIQVILH 60
           Y++ +I+VL GL+ VR+RPGMY     D T  +H+  EV+DNS+DEALAG+ S+I + +H
Sbjct: 6   YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSEITITIH 65

Query: 61  ADQSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGISVVN 120
            D S+ V DDGRG+PV IHPEE VS  E+I+  LHAGGKF + +Y+ SGGLHGVG+SVVN
Sbjct: 66  VDGSVSVKDDGRGIPVAIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN 125

Query: 121 ALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDSPNFS 180
           ALSK++++ +RRDG+V+E  + HG     + V G   +  TGT V FWP  + F    F 
Sbjct: 126 ALSKKLQLTIRRDGKVHEQFYTHGVPDAPIKVVGDATK--TGTEVRFWPSEETFSDTLFH 183

Query: 181 VSRLINNLRAKAVLCPGLEIIFTDKVNNNEHRWLYEDGLKDYLAEGVKGYTLLPEEPFTG 240
              L   +R  + L  G+ I   D+ +N +  + YE G+  ++    +  T + ++ F  
Sbjct: 184 FDILAKRVRELSFLNSGVGIRLVDERDNKDEFFKYEGGISAFVEYLNRNKTPVNKDIFHF 243

Query: 241 EFTAQTEAATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMREFCEFRNL 300
               +        +   +G +     + N IP   GGTH+ G R  L   +  + E    
Sbjct: 244 AQEREDGITVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRNLNNYMEAEGY 303

Query: 301 LPRG-VKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSGVVKDAFSLWLN 359
             +     TG+D  +    V+S+K+ DP+F+ QTK++L S +  + V   + +    +L 
Sbjct: 304 NKKNKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQTMGEKLGDYLL 363

Query: 360 EKPQLAEQLAEVCI--ANAHSRMRASKKVVRKKIASG-PALPGKLTDCTVQDLNRTELFL 416
           E P  A+ +    I  A A    R ++++ R+K A     LPGKL DC  +D   +E+++
Sbjct: 364 ENPGDAKLIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPGLSEIYI 423

Query: 417 VEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISVAL--GIDPDS 474
           VEGDSAGGSAKQ R+R+ QA++PL+GKILN  +   D++L+SQEV  +  AL  GI  D 
Sbjct: 424 VEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDE 483

Query: 475 DNLEALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPPLYRIDCGKE 534
            + +  RY  + I+ DAD DG HI TLL   F R    L++ G+VY+A PPLY++  GK 
Sbjct: 484 YDPDKTRYHYIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQPPLYKVKKGKH 543

Query: 535 VFYALDD 541
             Y  DD
Sbjct: 544 EQYLKDD 550



 Score = 69.7 bits (169), Expect = 5e-16
 Identities = 33/70 (47%), Positives = 51/70 (72%), Gaps = 1/70 (1%)

Query: 551 LSQKKAKVNVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDAEATDEMMDMLLGKKRA 610
           + + K  + +QR+KGLGEMNP QL ETTMDP +RR++Q+TI+DA A D++   L+G  + 
Sbjct: 728 VGESKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIEDAIAADQLFTCLMG-DQV 786

Query: 611 DDRRAWLQRN 620
           + RR +++ N
Sbjct: 787 EPRRDFIEAN 796