Pairwise Alignments

Query, 626 a.a., DNA topoisomerase IV subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 665 a.a., Gram negative topoisomerase IV, subunit B (NCBI) from Rhodospirillum rubrum S1H

 Score =  461 bits (1186), Expect = e-134
 Identities = 285/650 (43%), Positives = 374/650 (57%), Gaps = 30/650 (4%)

Query: 3   EQYNAGAIEVLNGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGYASKIQVIL 59
           + Y A +IEVL GLEPVRRRPGMY   TD    +HL  E++DN++DEA+AGYA  I + L
Sbjct: 15  DAYTARSIEVLEGLEPVRRRPGMYIGGTDERALHHLVAEILDNAMDEAVAGYAQVIDIDL 74

Query: 60  HADQSLEVIDDGRGMPVDIHPE-EKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGISV 118
             D S+ V D+GRG+P+D HP     S +E+IL  LH+GGKF    Y+ SGGLHGVGISV
Sbjct: 75  AVDGSVCVRDNGRGIPIDPHPRFPDKSALEVILTTLHSGGKFGGDAYKVSGGLHGVGISV 134

Query: 119 VNALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDS-P 177
           VNALS  + V V RD  ++   F  G  +  L   G    R  GT V F PD + F    
Sbjct: 135 VNALSDSLRVEVARDRTLWAQDFCRGAPLGPLQKIGPAPNRR-GTQVRFHPDAEIFGPRA 193

Query: 178 NFSVSRLINNLRAKAVLCPGL--------EIIFTDKVNNNEHRWLYEDGLKDYLAEGVKG 229
            F  + L    R+KA L  G+        E++  D     E  + + +GL DYL   +  
Sbjct: 194 RFKPALLHRMARSKAYLFRGVRIRWSCAPELLPDDAGVPAEDVFHFPNGLGDYLGHALAN 253

Query: 230 YTLLPEEPFTGEFTAQTEAAT--WAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGL 287
             L+    F G      +  T  WA+ W PE  E    SYVN IPT +GGTH  GLR  L
Sbjct: 254 RPLVGGRTFAGTANLPDDMGTVEWALCW-PEDDEPFFNSYVNTIPTPEGGTHEAGLRNAL 312

Query: 288 LDAMREFCEFRNLLPRGVKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVS 347
              +R F E          LT EDV    A + S+ ++DPQF GQTKE+L+S+++   V 
Sbjct: 313 TRGLRSFAEMSGNKKGAAALTAEDVVGGAAVMFSMFLRDPQFQGQTKEKLASQEATRLVE 372

Query: 348 GVVKDAFSLWLNEKPQLAEQLAEVCIANAHSRMRA--SKKVVRKKIASGPALPGKLTDCT 405
             ++D F  WL   P  A  L    +  A  R+R   +K+  RK       LPGKL+DCT
Sbjct: 373 QALRDPFDHWLTGAPDSANLLLTHALERADERLRRRQAKETSRKTATKKLRLPGKLSDCT 432

Query: 406 VQDLNRTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDIS 465
                 TELFLVEGDSAGGSAKQARDR+ QAV+PLRGKILN    S D++  +QE+ D++
Sbjct: 433 RSTRQGTELFLVEGDSAGGSAKQARDRQTQAVLPLRGKILNVASASLDKLRGNQELSDLA 492

Query: 466 VALGIDP-DSDNLEALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMP 524
            ALG     + +LE LRY KV I+ DAD DG HIA+LL   F R   ALV AGH+Y+AMP
Sbjct: 493 EALGCGTRGAFDLEHLRYDKVVIMTDADVDGAHIASLLMTFFFREMPALVSAGHLYLAMP 552

Query: 525 PLYRIDCGKEVFYALDDQEKEGVLERLSQKKAKVNVQRFKGLGEMNPLQLRETTMDPNTR 584
           PLYR+  G    YA DD  K+ +++ + + K KV + RFKGLGEM P QLRETTM   TR
Sbjct: 553 PLYRLTQGGTSVYARDDAHKDQLMKTVFKTKGKVEISRFKGLGEMPPAQLRETTMAYATR 612

Query: 585 RLVQLTI---------DDAEATDEMMDMLLGKKRADDRRAWLQRNGDMAE 625
           +L+++T+         +DA  T ++++ L+G+K  + R  ++Q N   AE
Sbjct: 613 QLLRVTVPGGKTEEDREDARETAKLVEELMGRK-PELRFRFIQENARFAE 661