Pairwise Alignments

Query, 626 a.a., DNA topoisomerase IV subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 802 a.a., DNA gyrase, B subunit (NCBI) from Rhodospirillum rubrum S1H

 Score =  398 bits (1022), Expect = e-115
 Identities = 234/561 (41%), Positives = 329/561 (58%), Gaps = 15/561 (2%)

Query: 1   MTEQ-YNAGAIEVLNGLEPVRRRPGMYTDTTRP----NHLGQEVIDNSVDEALAGYASKI 55
           MT+Q Y + +I+VL GLE VR+RPGMY   T      +H+  EV+DN++DEALAGY    
Sbjct: 1   MTQQAYTSESIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGYCDHS 60

Query: 56  QVILHADQSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVG 115
           +VIL+ D S+ V D+GRG+PVDIH EE VS  E+I+ +LHAGGKF   +Y+ SGGLHGVG
Sbjct: 61  EVILNGDGSVTVCDNGRGIPVDIHREEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVG 120

Query: 116 ISVVNALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFD 175
           +SVVNALS  +++ + RDG+ + + FEHG+ V  L V G CG R TGT + F      F 
Sbjct: 121 VSVVNALSDWLDLRIWRDGKEHYVRFEHGEVVAPLKVVGDCGDR-TGTEITFLASPAIFA 179

Query: 176 SPNFSVSRLINNLRAKAVLCPGLEIIFTDKVNNNEH--RWLYEDGLKDYLAEGVKGYTLL 233
              +  + L + LR  A L  G+ ++ TDK        ++ Y+ G+++++    K  T+L
Sbjct: 180 ITTYDYATLEHRLRELAFLNSGVRLLLTDKRGTEPRTTKFHYDGGIEEFVRYLDKSKTVL 239

Query: 234 PEEPFTGEFTAQTEAATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMRE 293
              P T            ++ W     E +   + N IP   GGTH+ G R GL   +  
Sbjct: 240 HSPPVTAIGERDGMIVELSLEWTDSYHETVL-CFTNNIPQRDGGTHMAGFRGGLTRTLNS 298

Query: 294 FCEFRNLLPR-GVKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSGVVKD 352
           + +   L+ +  V LTG+D+ +    VLS+K+ DP+F+ QTKE+L S +    V  VV +
Sbjct: 299 YAQDSGLMKKEKVTLTGDDMREGLTCVLSVKVPDPKFSSQTKEKLVSSEVRPVVEAVVVE 358

Query: 353 AFSLWLNEKPQLAEQLAEVCI--ANAHSRMRASKKVVRKKIASGPA-LPGKLTDCTVQDL 409
               WL E PQ A ++    +  A A    R ++++ R+K A   A LPGKL DC  +D 
Sbjct: 359 RLGQWLEEHPQEARKIIGKVVEAAAAREAARRARELTRRKGALDMASLPGKLADCQNRDP 418

Query: 410 NRTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISVAL- 468
            ++ELF+VEGDSAGGSAKQ RDR +QA++PLRGKILN      D++L+S E+  +  AL 
Sbjct: 419 AQSELFIVEGDSAGGSAKQGRDRGYQAILPLRGKILNVERARFDKMLSSAEIGTLIAALG 478

Query: 469 -GIDPDSDNLEALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPPLY 527
            GI  D  ++   RY K+ I+ DAD DG HI TLL   F R    +V+ G++Y+A PPLY
Sbjct: 479 TGIGKDDFDVGKARYHKIIIMTDADVDGSHIRTLLLTFFFRQMPEVVEKGYLYIAQPPLY 538

Query: 528 RIDCGKEVFYALDDQEKEGVL 548
           R   G    Y  DD+E E  L
Sbjct: 539 RAKRGNSEQYLKDDRELEDYL 559



 Score = 59.7 bits (143), Expect = 5e-13
 Identities = 28/63 (44%), Positives = 43/63 (68%), Gaps = 1/63 (1%)

Query: 558 VNVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDAEATDEMMDMLLGKKRADDRRAWL 617
           + +QR+KGLGEMNP QL ETT+DPN RRL+Q+ ++     +++   L+G    + RR ++
Sbjct: 732 IAIQRYKGLGEMNPEQLWETTLDPNVRRLLQVKVNQVSDAEDVFSTLMG-DIVEPRRDFI 790

Query: 618 QRN 620
           Q N
Sbjct: 791 QDN 793