Pairwise Alignments

Query, 626 a.a., DNA topoisomerase IV subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 804 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit B from Rahnella sp. WP5

 Score =  374 bits (959), Expect = e-107
 Identities = 221/554 (39%), Positives = 322/554 (58%), Gaps = 16/554 (2%)

Query: 1   MTEQYNAGAIEVLNGLEPVRRRPGMYT----DTTRPNHLGQEVIDNSVDEALAGYASKIQ 56
           M+  Y++ +I+VL GL+ VR+RPGMY     D T  +H+  EV+DN++DEALAG+  +IQ
Sbjct: 1   MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIQ 60

Query: 57  VILHADQSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGI 116
           V +HAD S+ V DDGRG+P  IH EE VS  ++I+  LHAGGKF + +Y+ SGGLHGVG+
Sbjct: 61  VTIHADNSVSVQDDGRGIPTGIHEEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 117 SVVNALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYF-D 175
           SVVNALS+++E+ +RR+G+V+   + HG+    L V G      TGT+V FWP    F +
Sbjct: 121 SVVNALSEKLELVIRREGKVHTQTYVHGEPQDPLKVIGDTD--VTGTTVRFWPSFNTFTN 178

Query: 176 SPNFSVSRLINNLRAKAVLCPGLEIIFTDKVNNNEHRWLYEDGLKDYLAEGVKGYTLLPE 235
              F    L   LR  + L  G+ I   DK +     + YE G+K ++    K  T  P 
Sbjct: 179 HTEFEYEILAKRLRELSFLNSGVAIRLLDKRDGKNDHFHYEGGIKAFVEYLNKNKT--PI 236

Query: 236 EPFTGEF-TAQTEAATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMREF 294
            P    F T + +      +   +G +     + N IP   GGTH+ G R  +   +  +
Sbjct: 237 HPTVFYFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRSAMTRTLNAY 296

Query: 295 CEFRNLLPRG-VKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSGVVKDA 353
            +      +  +  TG+D  +    V+S+K+ DP+F+ QTK++L S +    V  ++ + 
Sbjct: 297 MDKEGYSKKSKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEK 356

Query: 354 FSLWLNEKPQLAEQLAEVCI--ANAHSRMRASKKVVRKKIASGPA-LPGKLTDCTVQDLN 410
              +L E P  A+ +    I  A A    R ++++ R+K A   A LPGKL DC  +D  
Sbjct: 357 LVDYLMENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPA 416

Query: 411 RTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISVAL-- 468
            +EL+LVEGDSAGGSAKQ R+R+ QA++PL+GKILN  +   D++L+SQEV  +  AL  
Sbjct: 417 HSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGC 476

Query: 469 GIDPDSDNLEALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPPLYR 528
           GI  D  N + LRY  + I+ DAD DG HI TLL   F R    +V+ GHV++A PPLY+
Sbjct: 477 GIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVFIAQPPLYK 536

Query: 529 IDCGKEVFYALDDQ 542
           +  GK+  Y  DD+
Sbjct: 537 VKKGKQEQYIKDDE 550



 Score = 67.4 bits (163), Expect = 2e-15
 Identities = 31/70 (44%), Positives = 50/70 (71%), Gaps = 1/70 (1%)

Query: 551 LSQKKAKVNVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDAEATDEMMDMLLGKKRA 610
           + + +  +++QR+KGLGEMNP QL ETTMDP  RR++++T+ DA A D++   L+G    
Sbjct: 727 VKESRRGLSIQRYKGLGEMNPDQLWETTMDPEQRRMLRVTVKDAIAADQLFTTLMG-DAV 785

Query: 611 DDRRAWLQRN 620
           + RRA+++ N
Sbjct: 786 EPRRAFIEEN 795