Pairwise Alignments

Query, 626 a.a., DNA topoisomerase IV subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 805 a.a., DNA gyrase subunit GyrB from Phaeobacter inhibens DSM 17395

 Score =  388 bits (997), Expect = e-112
 Identities = 226/551 (41%), Positives = 319/551 (57%), Gaps = 18/551 (3%)

Query: 4   QYNAGAIEVLNGLEPVRRRPGMYTDTTRP----NHLGQEVIDNSVDEALAGYASKIQVIL 59
           +Y A +I+VL GLE VR+RPGMY   T      +H+  EV+DN +DEALAG+A ++ V +
Sbjct: 10  EYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGHADRVVVKI 69

Query: 60  HADQSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGISVV 119
           HAD S+ V D+GRG+PV IH EE VS  E+I+ +LHAGGKF + +Y+ SGGLHGVG+SVV
Sbjct: 70  HADSSVSVNDNGRGIPVGIHEEEGVSAAEVIMTQLHAGGKFDSNSYKVSGGLHGVGVSVV 129

Query: 120 NALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDSPNF 179
           NALS  +E+ + RDG+ +   FE GD    L V G CG + TGT V F   T  F +  +
Sbjct: 130 NALSDWLELRIWRDGKEHVARFERGDTAEHLKVVGDCGDQ-TGTEVRFLASTDTFSNLEY 188

Query: 180 SVSRLINNLRAKAVLCPGLEIIFTDK--VNNNEHRWLYEDGLKDYLAEGVKGYTLLPEEP 237
               L   LR  A L  G+ II  D+      E    YE G+K+++    +  + + E P
Sbjct: 189 LFETLEKRLRELAFLNSGVRIILIDERPAERLEVELFYEGGVKEFVKYLDRSKSPVMEAP 248

Query: 238 --FTGEFTAQTEAATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMREFC 295
              TG+   + E      +W  +        + N IP   GGTHV G R  L   +  + 
Sbjct: 249 IYITGD---RDEIGVEVAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFRGALTRTINNYA 305

Query: 296 EFRNLLPR-GVKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSGVVKDAF 354
           +   +  +  V  TG+D  +    VLS+K+ DP+F+ QTK++L S +    V  +V +  
Sbjct: 306 QSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVESLVNEKL 365

Query: 355 SLWLNEKPQLAEQLAEVCI--ANAHSRMRASKKVVRKKIASG-PALPGKLTDCTVQDLNR 411
           + W  E P  A+Q+    I  A A    R ++++ R+K A     L GKL DC+ +D ++
Sbjct: 366 AEWFEENPNQAKQIVGKIIEAALAREAARKARELTRRKTAMDVNYLAGKLKDCSEKDPSK 425

Query: 412 TELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISVAL--G 469
           TE+FLVEGDSAGGSA+  RDR  QA++PLRGKILN      D++L SQE+ ++ +AL  G
Sbjct: 426 TEVFLVEGDSAGGSAQTGRDRMTQAILPLRGKILNVERARFDRMLGSQEIGNLVMALGTG 485

Query: 470 IDPDSDNLEALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPPLYRI 529
           I  D  N++ LRY K+ I+ DAD DG HI TLL   F R    L++ G++Y+A PPLY++
Sbjct: 486 IGRDEFNIDKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIEGGYLYIAQPPLYKV 545

Query: 530 DCGKEVFYALD 540
             GK   Y  D
Sbjct: 546 SRGKSEVYLKD 556



 Score = 60.8 bits (146), Expect = 2e-13
 Identities = 31/76 (40%), Positives = 52/76 (68%), Gaps = 2/76 (2%)

Query: 546 GVLERLSQKKAK-VNVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDAEATDEMMDML 604
           G+L+ + ++  K + +QR+KGLGEMNP QL ETT+DP+ R L+Q+ ++D    D++   L
Sbjct: 722 GLLKAILEEGEKGLALQRYKGLGEMNPDQLWETTLDPDARTLLQVRVEDMVEADDLFTKL 781

Query: 605 LGKKRADDRRAWLQRN 620
           +G    + RR ++Q+N
Sbjct: 782 MGDV-VEPRREFIQKN 796