Pairwise Alignments

Query, 626 a.a., DNA topoisomerase IV subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 652 a.a., DNA topoisomerase 4 subunit B from Phaeobacter inhibens DSM 17395

 Score =  465 bits (1196), Expect = e-135
 Identities = 270/642 (42%), Positives = 389/642 (60%), Gaps = 22/642 (3%)

Query: 2   TEQYNAGAIEVLNGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGYASKIQVI 58
           ++ Y+A +IEVL GLEPVR+RPGMY   TD    +H+  E++DNS+DEA+AG+A++I+V 
Sbjct: 11  SDTYDASSIEVLEGLEPVRQRPGMYIGGTDERALHHMVAEILDNSMDEAVAGHANRIEVT 70

Query: 59  LHADQSLEVIDDGRGMPVDIHPE-EKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGIS 117
           LHAD ++ + D+GRG+P+D HP+    S +E+ILC LHAGGKFS K YQ SGGLHGVG S
Sbjct: 71  LHADYAVTISDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFSGKAYQTSGGLHGVGSS 130

Query: 118 VVNALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDSP 177
           VVNALS  + V V ++ +++E  F  G     +   G    +  GT V F  D + F S 
Sbjct: 131 VVNALSDSMVVQVAKNKELFEQRFSRGIPQGPVEKIGAAPNKR-GTFVTFHADEQIFGSH 189

Query: 178 NFSVSRLINNLRAKAVLCPGLEIIFTDKVNNNEH----RWLYEDGLKDYLAEGVKGYTLL 233
            F   RL   +R+KA L  G+EI +  ++++NE      + +  GLKDYL E +   ++ 
Sbjct: 190 RFKPKRLFTLVRSKAYLFSGVEIRWKSEIDDNETPTEATFHFPGGLKDYLTEVLGKSSVY 249

Query: 234 PEEPFTG--EFTAQTEA---ATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLL 288
            E+PF G  EF  +  A     WA+ W P   +  T+SY N +PT +GGTHV G    +L
Sbjct: 250 AEQPFAGKVEFREKFNAPGYVEWAINWTPSR-DGFTQSYCNTVPTPEGGTHVAGFWAAIL 308

Query: 289 DAMREFCEFRNLLPRGVKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSG 348
             ++ + +      +   +T ED+      ++S  + DP F GQTK+RLS+  +A  V  
Sbjct: 309 KGIKAYGDLVGN-KKAASITREDLMAGGCALVSCFIADPAFVGQTKDRLSTEIAAKMVEN 367

Query: 349 VVKDAFSLWLNEKPQLAEQLAEVCIANAHSRMRAS--KKVVRKKIASGPALPGKLTDCTV 406
            V+D F  WL    + A  + +  +  A  R+R    K+  RK       LPGKLTDCT 
Sbjct: 368 SVRDHFDNWLAADTKSAGAILDFLVLRAEERLRRKQEKETQRKSATKKLRLPGKLTDCTS 427

Query: 407 QDLNRTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISV 466
           +D   TELF+VEGDSAGGS K AR+R  QA++PL+GKILN    +++++  + E+ D+  
Sbjct: 428 KDRAGTELFIVEGDSAGGSGKGARNRVNQALLPLKGKILNVLGAASNKIGTNAEIRDLCE 487

Query: 467 ALGIDPDSD-NLEALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPP 525
           ALG+   +  NL+ LRY K+ I+ DAD DG HIA+LL   F    R L+  GH+Y+A PP
Sbjct: 488 ALGVGTGTKFNLDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDGGHLYLACPP 547

Query: 526 LYRIDCGKEVFYALDDQEKEGVLERLSQKKAKVNVQRFKGLGEMNPLQLRETTMDPNTRR 585
           L+R+  G    Y LD+ E++  LE+    K K++V RFKGLGEM+   L+ETTMDP TR+
Sbjct: 548 LFRLTQGARRVYCLDEAERDLWLEKGLGGKGKIDVSRFKGLGEMDAKDLKETTMDPTTRK 607

Query: 586 LVQLTIDDAE--ATDEMMDMLLGKKRADDRRAWLQRNGDMAE 625
           L+++TID+ E   T E+++ L+GKK  + R  ++Q N    E
Sbjct: 608 LIRVTIDEDEPGETGELVEQLMGKK-PELRYQYIQENAKFVE 648