Pairwise Alignments

Query, 626 a.a., DNA topoisomerase IV subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 628 a.a., DNA topoisomerase IV subunit B (RefSeq) from Shewanella loihica PV-4

 Score =  972 bits (2512), Expect = 0.0
 Identities = 472/628 (75%), Positives = 535/628 (85%), Gaps = 2/628 (0%)

Query: 1   MTEQYNAGAIEVLNGLEPVRRRPGMYTDTTRPNHLGQEVIDNSVDEALAGYASKIQVILH 60
           MT QY + AIEVLNGL+PV+RRPGMYTDTTRPNHLGQEVIDNSVDEALAG+A++I VILH
Sbjct: 1   MTNQYTSDAIEVLNGLDPVKRRPGMYTDTTRPNHLGQEVIDNSVDEALAGHATRIDVILH 60

Query: 61  ADQSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGISVVN 120
            D SLEVIDDGRGMPVDIHPEE + GVELIL KLHAGGKFSN NYQFSGGLHGVGISVVN
Sbjct: 61  KDNSLEVIDDGRGMPVDIHPEEGIPGVELILTKLHAGGKFSNNNYQFSGGLHGVGISVVN 120

Query: 121 ALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDSPNFS 180
           ALS RVE+ VRR GQVYE+AFEHGDKV ELTVTGTCGRRNTGT VHFWP   YFDS NFS
Sbjct: 121 ALSNRVEITVRRSGQVYEMAFEHGDKVEELTVTGTCGRRNTGTRVHFWPTASYFDSVNFS 180

Query: 181 VSRLINNLRAKAVLCPGLEIIFTDKVNNNEHRWLYEDGLKDYLAEGVKGYTLLPEEPFTG 240
           + +LI  LRAKAVLCPGL I FT+K   +   W YE GL DYL    +G   LPEEPF G
Sbjct: 181 IPKLIYLLRAKAVLCPGLRIKFTNKQTGDVEEWCYESGLTDYLKSSTQGALTLPEEPFIG 240

Query: 241 EFTAQTEAATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMREFCEFRNL 300
                TEA  WA+ WLPEGG+ + ESYVNLIPT  GGTHVNG RQGLL+AMREFCEFRNL
Sbjct: 241 SMAGNTEAVDWAITWLPEGGDSLNESYVNLIPTPLGGTHVNGFRQGLLEAMREFCEFRNL 300

Query: 301 LPRGVKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSGVVKDAFSLWLNE 360
           +PRG+KL+ ED++DR +++LSIKMQDPQFAGQTKE+LSSRQSAAFVSG+V+DAFSLWLN 
Sbjct: 301 IPRGIKLSPEDIWDRSSFILSIKMQDPQFAGQTKEKLSSRQSAAFVSGIVRDAFSLWLNT 360

Query: 361 KPQLAEQLAEVCIANAHSRMRASKKVVRKKIASGPALPGKLTDCTVQDLNRTELFLVEGD 420
               AE LAE+CI+NA  R++A+KKV RKK+ SGPALPGKLTDC+ QD  R ELFLVEGD
Sbjct: 361 HTDQAEALAEMCISNAQKRLKAAKKVARKKVTSGPALPGKLTDCSGQDPMRGELFLVEGD 420

Query: 421 SAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISVALGIDPDSDNLEAL 480
           SAGGSAKQARDREFQA+MPLRGKILNTWEV A QVLASQEVHDISVA+G DPDS+++  L
Sbjct: 421 SAGGSAKQARDREFQAIMPLRGKILNTWEVEASQVLASQEVHDISVAIGCDPDSNDISEL 480

Query: 481 RYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPPLYRIDCGKEVFYALD 540
           RYGK+CILADADSDGLHIATLLCALF +H++ LV+ GH+YVAMPPL+R+D GKEV+YALD
Sbjct: 481 RYGKICILADADSDGLHIATLLCALFMKHYKVLVEKGHIYVAMPPLFRVDVGKEVYYALD 540

Query: 541 DQEKEGVLERLS--QKKAKVNVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDAEATD 598
           + EK+G+L+R+S  +KK KV V RFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDAE T 
Sbjct: 541 EAEKQGILDRISAEKKKGKVQVTRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDAEDTL 600

Query: 599 EMMDMLLGKKRADDRRAWLQRNGDMAEV 626
            +MDMLL KKR+ DR+ WL+  GD+A++
Sbjct: 601 AIMDMLLAKKRSGDRKTWLETKGDLAQL 628