Pairwise Alignments

Query, 626 a.a., DNA topoisomerase IV subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 805 a.a., DNA gyrase, B subunit (RefSeq) from Shewanella loihica PV-4

 Score =  365 bits (936), Expect = e-105
 Identities = 215/553 (38%), Positives = 320/553 (57%), Gaps = 24/553 (4%)

Query: 5   YNAGAIEVLNGLEPVRRRPGMYT----DTTRPNHLGQEVIDNSVDEALAGYASKIQVILH 60
           Y++ +I+VL GL+ VR+RPGMY     D T  +H+  EV+DNS+DEALAGY + + + +H
Sbjct: 6   YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCNDVIITIH 65

Query: 61  ADQSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGISVVN 120
           AD S+ V DDGRG+PV IHPEE VS  ++I+  LHAGGKF + +Y+ SGGLHGVG+SVVN
Sbjct: 66  ADGSVSVKDDGRGIPVAIHPEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN 125

Query: 121 ALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDSPNFS 180
           ALS+++++ +RRDG++YE  +  G+    +   G     NTGT + FWP  + F    F 
Sbjct: 126 ALSEKLKLTIRRDGKLYEQFYTMGEPDAPIAEIGDA--TNTGTEIRFWPSAETFSDTLFH 183

Query: 181 VSRLINNLRAKAVLCPGLEIIFTDKVNNNEHRWLYEDGLKDYLAEGVKGYTLLPEEPFTG 240
              L   +R  + L  G+ I   D+ +N +  + YE G+  ++      Y  L + P   
Sbjct: 184 FDILAKRVRELSFLNSGVGIRLIDERDNKDEFFKYEGGISAFV-----DYLNLNKTPVNK 238

Query: 241 E---FTAQTE---AATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMREF 294
           E   F  + E       A+ W  +G +     + N IP   GGTH+ G R  L   +  +
Sbjct: 239 EIFHFVQEREDGITVEVAMQW-NDGFQENIFCFTNNIPQRDGGTHLAGFRAALTRNLNSY 297

Query: 295 CEFRNLLPRG-VKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSGVVKDA 353
            +      +G    TG+D  +    V+S+K+ DP+F+ QTK++L S +  + V   + + 
Sbjct: 298 MDKEGFNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQTMGEK 357

Query: 354 FSLWLNEKPQLAEQLAEVCI--ANAHSRMRASKKVVRKKIASG-PALPGKLTDCTVQDLN 410
              +L E P  A+ +    I  A A    R ++++ R+K A     LPGKL DC  +D  
Sbjct: 358 LGDYLLENPNEAKLIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPA 417

Query: 411 RTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISVAL-- 468
            +E+++VEGDSAGGSAKQ R+R+ QA++PL+GKILN  +   D++L+SQEV  +  AL  
Sbjct: 418 LSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGC 477

Query: 469 GIDPDSDNLEALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPPLYR 528
           GI  D  + +  RY  + I+ DAD DG HI TLL   F R    L++ G+V++A PPLY+
Sbjct: 478 GIGRDEYDPDKTRYHNIVIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVFIAQPPLYK 537

Query: 529 IDCGKEVFYALDD 541
           +  GK+  Y  DD
Sbjct: 538 VKKGKQEQYLKDD 550



 Score = 68.2 bits (165), Expect = 1e-15
 Identities = 32/70 (45%), Positives = 51/70 (72%), Gaps = 1/70 (1%)

Query: 551 LSQKKAKVNVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDAEATDEMMDMLLGKKRA 610
           ++  K  + +QR+KGLGEMNP QL ETTMDP +RR++++TI+DA A D++   L+G  + 
Sbjct: 728 MNDSKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLKVTIEDAIAADQLFTCLMG-DQV 786

Query: 611 DDRRAWLQRN 620
           + RR +++ N
Sbjct: 787 EPRRDFIESN 796