Pairwise Alignments

Query, 626 a.a., DNA topoisomerase IV subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 657 a.a., type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit from Dechlorosoma suillum PS

 Score =  601 bits (1550), Expect = e-176
 Identities = 320/650 (49%), Positives = 432/650 (66%), Gaps = 31/650 (4%)

Query: 5   YNAGAIEVLNGLEPVRRRPGMYTDTTRPNHLGQEVIDNSVDEALAGYASKIQVILHADQS 64
           YNA +I VL GLEPV++RPGMYT T  P H+ QEVIDN+ DEA+AG+A  I V +H D S
Sbjct: 7   YNASSITVLKGLEPVKQRPGMYTRTENPLHIIQEVIDNAADEAIAGFAKSILVTVHVDGS 66

Query: 65  LEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKN----YQFSGGLHGVGISVVN 120
           + V D+GRG+PV++HP E    VE++  +LHAGGKF NK     Y FSGGLHGVG+SV N
Sbjct: 67  ISVADNGRGIPVELHPVENAPTVEVVFTRLHAGGKF-NKGAGGAYSFSGGLHGVGVSVTN 125

Query: 121 ALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDSPNFS 180
           ALS R+EV V R+G ++ + F  GD V  L   G   ++ +GT V  WPD KYFDSP   
Sbjct: 126 ALSTRLEVEVAREGGMHRLVFAAGDVVEPLARIGDAPKKASGTRVRAWPDAKYFDSPTIP 185

Query: 181 VSRLINNLRAKAVLCPGLEIIFTDKVNNNEHRWLYEDGLKDYLAEGVKGYTLL------- 233
           +  L + LR+KAVL PG+ +    + +     W Y+DG++ YLAE + G  L+       
Sbjct: 186 MGELEHILRSKAVLLPGVAVTLHIERSGETKEWAYKDGMRGYLAELLDGTDLVIPMIVGE 245

Query: 234 --PEEPFTGEFTAQTEAATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAM 291
               +P  G+  A+ E A WA+ W  EG  L  ESYVNLIPT  GGTH +GLR G+  A+
Sbjct: 246 KYAGKPTNGDGFAEGEGAAWAIAWTEEGA-LARESYVNLIPTPGGGTHESGLRDGIFQAV 304

Query: 292 REFCEFRNLLPRGVKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSGVVK 351
           + F +  +LLP+GVKL  EDVF R +++LS ++ DP F GQTK+RL+SR +   VS + +
Sbjct: 305 KSFVDMHSLLPKGVKLLPEDVFGRASFLLSARILDPSFQGQTKDRLNSRDAVKLVSAMFR 364

Query: 352 DAFSLWLNEKPQLAEQLAEVCIANAHSRMRASKKVVRKKIASGPALPGKLTDCTVQDLNR 411
           D F LWLNE  +  ++LAE+ I  A SR R+++KV +KK +    LPGKLTDC   D+ R
Sbjct: 365 DTFELWLNEHVEYGKKLAELSIKQAQSRQRSAQKVEKKKGSGVAVLPGKLTDCESDDIER 424

Query: 412 TELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISVALGID 471
            ELFLVEGDSAGGSAKQ RD+EFQA++PLRGK+ N+WEV  D++ A+ E+H+I+VA+G+D
Sbjct: 425 NELFLVEGDSAGGSAKQGRDKEFQALLPLRGKVQNSWEVEPDRLYANVEIHNIAVAIGVD 484

Query: 472 P---DSD-NLEALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPPLY 527
               +SD +++ LRYGKV I++DAD DG HI  LL  LF RHF  L+  G++YVA PPL+
Sbjct: 485 HHTLESDTSIDGLRYGKVIIMSDADVDGSHIQCLLLTLFFRHFPKLIANGNIYVAKPPLF 544

Query: 528 RIDC---GK----EVFYALDDQEKEGVLERLSQKKAK---VNVQRFKGLGEMNPLQLRET 577
           R+D    GK       YALD+ E E V ++L ++  K   +++ RFKGLGEM+  QL +T
Sbjct: 545 RVDVPGQGKNRPPRKIYALDENELEAVKDKLVKEGIKLEALSISRFKGLGEMSSEQLWDT 604

Query: 578 TMDPNTRRLVQLTIDD--AEATDEMMDMLLGKKRADDRRAWLQRNGDMAE 625
           T++P+TRRLV++   D   E T   M+ML+GK  A  RR WL+ +G+  E
Sbjct: 605 TLNPDTRRLVRVEFGDYPMEETIAKMNMLMGKGEASSRREWLEVHGNEVE 654