Pairwise Alignments

Query, 626 a.a., DNA topoisomerase IV subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 830 a.a., DNA gyrase, B subunit from Dechlorosoma suillum PS

 Score =  374 bits (960), Expect = e-108
 Identities = 231/582 (39%), Positives = 330/582 (56%), Gaps = 35/582 (6%)

Query: 5   YNAGAIEVLNGLEPVRRRPGMY----TDTTRPNHLGQEVIDNSVDEALAGYASKIQVILH 60
           Y   +I++L GLE VR+RPGMY    +D T  +HL  EV+DNS+DEALAG+   I V +H
Sbjct: 18  YGESSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDITVTIH 77

Query: 61  ADQSLEVIDDGRGMP----VDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGI 116
           AD S+ V D+GRG+P    +D   E K S  E+ L +LHAGGKF+  +Y+ SGGLHGVG+
Sbjct: 78  ADNSISVTDNGRGIPTGVKMDDKHEPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGV 137

Query: 117 SVVNALSKRVEVAVRRDGQVYEIAFEHGD------------KVTELTVTGTCGRRNTGTS 164
           S VNALSK + + +RRDG+ + I F  G             +V+ L V G   +R  GT 
Sbjct: 138 SCVNALSKWLRLTIRRDGKRHFIEFNRGVPVERVIEVRDGFEVSPLKVLGDTDKR--GTE 195

Query: 165 VHFWPDTKYFDSPNFSVSRLINNLRAKAVLCPGLEIIFTDKVNNNEHRWLYEDGLKDYLA 224
           VHF  D + F +  F    L   LR  + L  G+ I   D+ N  E  + +  G++ ++ 
Sbjct: 196 VHFLADDEIFGTVEFHYEILAKRLRELSFLNNGVSIRLVDQRNGKEELFAFAGGVQSFVE 255

Query: 225 EGVKGYTLLPEEPF--TGEF----TAQTEAATWAVIWLPEGGELITESYVNLIPTAQGGT 278
              +  ++L    F   GE     T  T     A+ W     E +   + N IP + GGT
Sbjct: 256 YINRTKSVLHPSIFYSAGEAKVGDTGVTIGVEVAMQWNDSYQEQVL-CFTNNIPQSDGGT 314

Query: 279 HVNGLRQGLLDAMREFCEFRNLLPRG-VKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERL 337
           H+ GLR  +   + ++ E   +  +  V++TG+D+ +  A VLS+KM DP+FA QTK +L
Sbjct: 315 HLTGLRAAMTRIINKYIEENEIAKKAKVEITGDDMREGLACVLSVKMPDPKFASQTKMKL 374

Query: 338 SSRQSAAFVSGVVKDAFSLWLNEKPQLAEQLAEVCIANAHSR---MRASKKVVRKKIASG 394
            S ++   V  VV    + +L E+P  A+ +    +  A +R    +A +   RK I  G
Sbjct: 375 VSSEARPAVEEVVAAKLTEFLLERPVDAKTICGKIVEAARARDAARKAREMTRRKGILDG 434

Query: 395 PALPGKLTDCTVQDLNRTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQ 454
             LPGKL DC  +D  + EL+LVEGDSAGGSAKQ RDR+FQA++PL+GKILN  +   D+
Sbjct: 435 VGLPGKLADCQEKDPTQCELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDK 494

Query: 455 VLASQEVHDISVAL--GIDPDSDNLEALRYGKVCILADADSDGLHIATLLCALFTRHFRA 512
           +++SQE+  +  AL  GI  D    E LRY ++ I+ DAD DG HI TLL   F R    
Sbjct: 495 LISSQEIATLITALGTGIGKDEYKPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPE 554

Query: 513 LVKAGHVYVAMPPLYRIDCGKEVFYALDDQEKEGVLERLSQK 554
           LV+ GH+Y+A PPLY++  GK   Y  DD E +  L +++ +
Sbjct: 555 LVERGHIYIAQPPLYKVKHGKTERYLKDDHEYQQFLLQMAME 596



 Score = 68.2 bits (165), Expect = 1e-15
 Identities = 35/75 (46%), Positives = 52/75 (69%), Gaps = 1/75 (1%)

Query: 551 LSQKKAKVNVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDAEATDEMMDMLLGKKRA 610
           L++ +  ++ QR+KGLGEMNP QL ETTMDPN RRL+++ IDDA   DE+   L+G +  
Sbjct: 753 LNEVEKGISKQRYKGLGEMNPEQLWETTMDPNVRRLLRVGIDDAIGADEVFTTLMG-ELV 811

Query: 611 DDRRAWLQRNGDMAE 625
           + RR +++ N   A+
Sbjct: 812 EPRRNFIESNALRAQ 826