Pairwise Alignments

Query, 626 a.a., DNA topoisomerase IV subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 628 a.a., DNA topoisomerase IV, B subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  992 bits (2565), Expect = 0.0
 Identities = 485/626 (77%), Positives = 541/626 (86%), Gaps = 2/626 (0%)

Query: 1   MTEQYNAGAIEVLNGLEPVRRRPGMYTDTTRPNHLGQEVIDNSVDEALAGYASKIQVILH 60
           MT QY + AIEVLNGL+PV+RRPGMYTDTTRPNHLGQEVIDNSVDEALAG+A+KI+V+LH
Sbjct: 1   MTNQYTSDAIEVLNGLDPVKRRPGMYTDTTRPNHLGQEVIDNSVDEALAGHATKIEVVLH 60

Query: 61  ADQSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGISVVN 120
            D SLEV DDGRGMPVDIHPEE + GVELIL KLHAGGKFSNKNYQFSGGLHGVGISVVN
Sbjct: 61  TDNSLEVTDDGRGMPVDIHPEEGIPGVELILTKLHAGGKFSNKNYQFSGGLHGVGISVVN 120

Query: 121 ALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDSPNFS 180
           ALS+RVEV VRRDGQVY+IAFE+G KV EL VTGTCGRRNTGT VHFWPDT YFDSPNFS
Sbjct: 121 ALSRRVEVTVRRDGQVYDIAFENGFKVEELKVTGTCGRRNTGTRVHFWPDTSYFDSPNFS 180

Query: 181 VSRLINNLRAKAVLCPGLEIIFTDKVNNNEHRWLYEDGLKDYLAEGVKGYTLLPEEPFTG 240
            S+LI  LRAKAVLCPGL I FT+K  N  H W YE GL DYL   V    +LPEEPF G
Sbjct: 181 NSKLIYLLRAKAVLCPGLRIKFTNKHTNEVHEWYYESGLTDYLKAAVGDNIMLPEEPFIG 240

Query: 241 EFTAQTEAATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMREFCEFRNL 300
            F  Q EAA WA+ WLPEGGE I ESYVNLIPT  GGTHVNG RQGLL++MREFCEFRNL
Sbjct: 241 SFKGQIEAADWAITWLPEGGESINESYVNLIPTPLGGTHVNGFRQGLLESMREFCEFRNL 300

Query: 301 LPRGVKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSGVVKDAFSLWLNE 360
           +PRG+KL+ ED++DR A++LS+KMQDPQFAGQTKE+LSSRQS+AFVSG+V+DAFSLWLN 
Sbjct: 301 IPRGIKLSPEDIWDRAAFILSVKMQDPQFAGQTKEKLSSRQSSAFVSGIVRDAFSLWLNS 360

Query: 361 KPQLAEQLAEVCIANAHSRMRASKKVVRKKIASGPALPGKLTDCTVQDLNRTELFLVEGD 420
             +LAE LAE+CI NA  R++A+KKV RKK+ SGPALPGKLTDC+ QD  R ELFLVEGD
Sbjct: 361 NTELAESLAEMCINNAQKRLKAAKKVARKKVTSGPALPGKLTDCSGQDPMRGELFLVEGD 420

Query: 421 SAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISVALGIDPDSDNLEAL 480
           SAGGSAKQARDREFQA+MPLRGKILNTWEV A QVLASQEVHDISVA+G DPDS+++  L
Sbjct: 421 SAGGSAKQARDREFQAIMPLRGKILNTWEVDASQVLASQEVHDISVAIGCDPDSNDISEL 480

Query: 481 RYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPPLYRIDCGKEVFYALD 540
           RYGK+CILADADSDGLHIATLLCALF +H+R LV+ GHVY+AMPPL+RID GK+V+YALD
Sbjct: 481 RYGKICILADADSDGLHIATLLCALFLKHYRVLVEQGHVYIAMPPLFRIDIGKDVYYALD 540

Query: 541 DQEKEGVLERLS--QKKAKVNVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDAEATD 598
           D EKEGVL+R++   KK KV V RFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDAE TD
Sbjct: 541 DAEKEGVLDRINAENKKGKVQVTRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDAEETD 600

Query: 599 EMMDMLLGKKRADDRRAWLQRNGDMA 624
            +MDMLL KKR+ DR+ WL+  GDMA
Sbjct: 601 SLMDMLLAKKRSPDRKNWLEDKGDMA 626