Pairwise Alignments

Query, 626 a.a., DNA topoisomerase IV subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 805 a.a., DNA gyrase, B subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  365 bits (936), Expect = e-105
 Identities = 211/547 (38%), Positives = 315/547 (57%), Gaps = 12/547 (2%)

Query: 5   YNAGAIEVLNGLEPVRRRPGMYT----DTTRPNHLGQEVIDNSVDEALAGYASKIQVILH 60
           Y++ +I+VL GL+ VR+RPGMY     D T  +H+  EV+DNS+DEALAG+ + I + +H
Sbjct: 6   YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCTDITITIH 65

Query: 61  ADQSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGISVVN 120
            D S+ V DDGRG+PV IH EE VS  E+I+  LHAGGKF + +Y+ SGGLHGVG+SVVN
Sbjct: 66  VDGSVSVKDDGRGIPVSIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN 125

Query: 121 ALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDSPNFS 180
           ALSK++++ +RRDG+V+E  + HG  V +  +        TGT + FWP  + F +  F 
Sbjct: 126 ALSKKLQLTIRRDGKVHEQFYTHG--VPDAPIKEIGDATKTGTEIRFWPSEQTFSNVEFH 183

Query: 181 VSRLINNLRAKAVLCPGLEIIFTDKVNNNEHRWLYEDGLKDYLAEGVKGYTLLPEEPFTG 240
              L   +R  + L  G+ I   D+ +N    + YE G+  ++    +  T + ++ F  
Sbjct: 184 FEILAKRVRELSFLNSGVGIRLVDERDNKNEFFKYEGGISAFVDYLNRNKTPVNKDVFHF 243

Query: 241 EFTAQTEAATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMREFCEFRNL 300
                        +   +G +     + N IP   GGTH+ G R  L   +  + E    
Sbjct: 244 MQERDDGITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLAGFRSALTRNLNNYMENEGY 303

Query: 301 LPRG-VKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSGVVKDAFSLWLN 359
             +G    TG+D  +    V+S+K+ DP+F+ QTK++L S +  A V   + +  + +L 
Sbjct: 304 NKKGKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKAAVEQTMGEKLNDYLL 363

Query: 360 EKPQLAEQLAE--VCIANAHSRMRASKKVVRKKIASG-PALPGKLTDCTVQDLNRTELFL 416
           E P  A+ +    V  A A    R ++++ R+K A     LPGKL DC  +D   +E+++
Sbjct: 364 ENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPGLSEIYI 423

Query: 417 VEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISVAL--GIDPDS 474
           VEGDSAGGSAKQ R+R+ QA++PL+GKILN  +   D++L+SQEV  +  AL  GI  D 
Sbjct: 424 VEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDE 483

Query: 475 DNLEALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPPLYRIDCGKE 534
            N +  RY  + I+ DAD DG HI TLL   F R    L++ G+VY+A PPL+++  GK+
Sbjct: 484 YNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQPPLFKVKKGKQ 543

Query: 535 VFYALDD 541
             Y  D+
Sbjct: 544 EQYLKDE 550



 Score = 72.0 bits (175), Expect = 9e-17
 Identities = 34/70 (48%), Positives = 51/70 (72%), Gaps = 1/70 (1%)

Query: 551 LSQKKAKVNVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDAEATDEMMDMLLGKKRA 610
           +S+ K  + +QR+KGLGEMNP QL ETTMDP +RR++Q+TIDDA   D++   L+G  + 
Sbjct: 728 ISEAKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIDDAVGADQLFTCLMG-DQV 786

Query: 611 DDRRAWLQRN 620
           + RR +++ N
Sbjct: 787 EPRREFIEAN 796