Pairwise Alignments

Query, 626 a.a., DNA topoisomerase IV subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 798 a.a., DNA gyrase, B subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  385 bits (989), Expect = e-111
 Identities = 229/561 (40%), Positives = 330/561 (58%), Gaps = 16/561 (2%)

Query: 5   YNAGAIEVLNGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGYASKIQVILHA 61
           Y A +I +L GL  VR+RP MY   TD    +HL  EV+DNS+DEA+AG+ SK+ V LH 
Sbjct: 9   YTADSITILEGLSAVRKRPAMYIGSTDARGLHHLVYEVVDNSIDEAMAGFCSKVVVKLHL 68

Query: 62  DQSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGISVVNA 121
           D S+ V D+GRG+PVD+HP+E    VE+++ KLHAGGKF N  Y+ SGGLHGVG+S VNA
Sbjct: 69  DNSVTVSDNGRGIPVDMHPKEGRPAVEVVMTKLHAGGKFDNNAYKVSGGLHGVGVSCVNA 128

Query: 122 LSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDSPNFSV 181
           LS+ +EV V+RDGQ Y   +  G    +L V G       GT+V F PD + F++  FS 
Sbjct: 129 LSEWLEVRVKRDGQRYGQRYARGVPQEDLRVLG--ASEGHGTTVRFKPDEEIFETNQFSY 186

Query: 182 SRLINNLRAKAVLCPGLEIIFTDKVNNNEHRWLYEDGLKDYLAEGVKGYTLLPEEPFTGE 241
             L       + L  GLEI F D+ +   H +  E G++ ++ +   G T +      GE
Sbjct: 187 ETLRKRFEELSYLNRGLEIEFIDERSGESHTFFAEGGIRQFVKDLNSGETGI-HPIVAGE 245

Query: 242 FTAQTEAATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMREFCEFRNLL 301
                    +A+ +     E +  ++ N I T +GGTH+ G +  L  A+  + + +  L
Sbjct: 246 GKTDGVVVDFALQYNAGYKENVL-TFANNIRTKEGGTHLAGFKTALTRAINGYVKGQADL 304

Query: 302 P---RGVKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSGVVKDAFSLWL 358
               +G  L+G+DV +    V+S+K+  PQF GQTK +L + + A  V+G+V D  ++  
Sbjct: 305 TKKMKGTALSGDDVREGLTAVVSVKLPQPQFEGQTKTKLGNSEIAGIVAGIVYDRLNVHF 364

Query: 359 NEKPQLAEQLAEVCI--ANAHSRMRASKKVVRKKIA-SGPALPGKLTDCTVQDLNRTELF 415
            E P+    + +  +  A A    R +K++VR+K A S  ALPGKL DC  +D   +ELF
Sbjct: 365 EENPKDVRLIIDKAVDAARARDAARRAKELVRRKGALSDNALPGKLADCQSKDPALSELF 424

Query: 416 LVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISVAL--GIDPD 473
           +VEGDSAGGSAKQ RD   QA++PLRGKILNT     D++LA++EV  +  A+  GI  D
Sbjct: 425 IVEGDSAGGSAKQGRDPSTQAILPLRGKILNTERTRFDKMLANKEVKALITAMGAGIGED 484

Query: 474 SDNLEALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPPLYRIDCGK 533
             + + LRY K+ I+ DAD DG HI TLL   F R ++ L+++G++Y+A PPLYR    +
Sbjct: 485 DTDYDKLRYHKIVIMTDADVDGAHIRTLLLTFFFRQYQKLIESGYLYIAQPPLYRAHNSR 544

Query: 534 EVFYALDDQEKEG-VLERLSQ 553
              +  DD E    +L R+S+
Sbjct: 545 MERFIKDDAELNNFLLTRVSE 565



 Score = 65.9 bits (159), Expect = 7e-15
 Identities = 34/75 (45%), Positives = 53/75 (70%), Gaps = 3/75 (4%)

Query: 548 LERLSQKKAK--VNVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDAEATDEMMDMLL 605
           L+R+  ++A+  +N+QR+KGLGEMNP QL  TTM+P  R L+Q++I+DAE   +  + L+
Sbjct: 716 LQRMVFEEARRGLNIQRYKGLGEMNPEQLWVTTMNPENRTLLQVSIEDAEEASDAFEQLM 775

Query: 606 GKKRADDRRAWLQRN 620
           G  R + RR ++ RN
Sbjct: 776 G-DRVEPRREFIVRN 789