Pairwise Alignments

Query, 626 a.a., DNA topoisomerase IV subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 695 a.a., topoisomerase IV subunit B from Caulobacter crescentus NA1000

 Score =  474 bits (1220), Expect = e-138
 Identities = 280/641 (43%), Positives = 395/641 (61%), Gaps = 25/641 (3%)

Query: 4   QYNAGAIEVLNGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGYASKIQVILH 60
           +Y+A  IEVL GLEPVR+RPGMY   TD    +HL  EV+DNS+DEA+AG+A  I+V L 
Sbjct: 54  EYSAADIEVLEGLEPVRKRPGMYIGGTDERALHHLFAEVLDNSMDEAVAGFAKTIEVKLD 113

Query: 61  ADQSLEVIDDGRGMPVDIHPEEK-VSGVELILCKLHAGGKFSNKNYQFSGGLHGVGISVV 119
           AD  L V DDGRGMPVD HP+    S +E+I+  LHAGGKF+ K Y+ SGGLHGVG SVV
Sbjct: 114 ADGFLSVKDDGRGMPVDPHPKYPGKSALEVIMTVLHAGGKFTGKAYETSGGLHGVGASVV 173

Query: 120 NALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYF-DSPN 178
           NALS+RVEV V RDG  +   F  G  +  +       ++  GT V F PD + F +  N
Sbjct: 174 NALSERVEVTVWRDGFEHLQVFSRGKPLGPIQQVAPSKKK--GTMVRFKPDDEIFGEGTN 231

Query: 179 FSVSRLINNLRAKAVLCPGLEIIFT---DKVNNN---EHRWLYEDGLKDYLAEGVKGYTL 232
           F  +RL    R+KA L  G++I ++    ++++    E  + + +GL D+LAE  KG T 
Sbjct: 232 FKPARLYRMARSKAYLFRGVQIKWSCDPSRIHDQTPPEATFHFPNGLADFLAERTKGLTT 291

Query: 233 LPEEPFTGEFTAQTEAAT--WAVIWLPEG-GEL--ITESYVNLIPTAQGGTHVNGLRQGL 287
           +  E F G    Q EA    WAV W P+G GE     +SY N +PT +GGTH +G R  L
Sbjct: 292 ITPESFAGRIERQGEAGAVEWAVTWTPQGFGEHDGFMQSYCNTVPTPEGGTHESGFRAAL 351

Query: 288 LDAMREFCEFRNLLPRGVKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVS 347
              ++ + E +    RG  +T +DV  +   ++S+ +++P+F GQTKE+LS+ ++  FV 
Sbjct: 352 TRGLKAYAELKGE-KRGTIITADDVVAQAGALISVFIKNPEFQGQTKEKLSTSEAQRFVE 410

Query: 348 GVVKDAFSLWLNEKPQLAEQLAEVCIANAHSRM--RASKKVVRKKIASGPALPGKLTDCT 405
             ++D F LWL+  P+ A+ L E  I  A  R+  R  K+V R        LPGKL DC 
Sbjct: 411 ASLRDPFDLWLSSSPKNAQALLEFVIERAEERLKRRKDKEVSRASATRKLRLPGKLADCA 470

Query: 406 VQDLNRTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDIS 465
              ++  ELF+VEGDSAGGSAKQARDR++QA++PLRGKILN    S ++  A++E+ D+ 
Sbjct: 471 GSAVDGAELFIVEGDSAGGSAKQARDRKYQAILPLRGKILNVASASGEKFTANKELSDLM 530

Query: 466 VALGIDPDSD-NLEALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMP 524
           +ALG    +    E LRY ++ I+ DAD DG HIA+LL   F R    L++ GH+++A+P
Sbjct: 531 LALGAQAGAKYREEDLRYERIIIMTDADVDGAHIASLLITFFYRTMPELIRGGHLFLALP 590

Query: 525 PLYRIDCGKEVFYALDDQEKEGVLERLSQKKAKVNVQRFKGLGEMNPLQLRETTMDPNTR 584
           PLYR+  G +  YA DD  KE +L  + + K K  + RFKGLGEM   QL+ETTMDP  R
Sbjct: 591 PLYRLAHGGKSEYARDDAHKEELLATVFKGK-KPEIGRFKGLGEMMASQLKETTMDPKKR 649

Query: 585 RLVQLTID-DAEATDEMMDMLLGKKRADDRRAWLQRNGDMA 624
            L ++T+    E+ +++++ L+G+K  + R  ++Q N + A
Sbjct: 650 TLARVTLPRHEESVEDLVETLMGRK-PELRFRFIQENAEFA 689