Pairwise Alignments

Query, 626 a.a., DNA topoisomerase IV subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 823 a.a., DNA gyrase subunit B from Burkholderia phytofirmans PsJN

 Score =  365 bits (936), Expect = e-105
 Identities = 222/628 (35%), Positives = 346/628 (55%), Gaps = 36/628 (5%)

Query: 5   YNAGAIEVLNGLEPVRRRPGMY----TDTTRPNHLGQEVIDNSVDEALAGYASKIQVILH 60
           Y A +I++L GLE VR+RPGMY    +D T  +HL  EV+DNS+DEALAG+ + IQVI+H
Sbjct: 13  YGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGHCNDIQVIIH 72

Query: 61  ADQSLEVIDDGRGMPVDIHPEEKV----SGVELILCKLHAGGKFSNKNYQFSGGLHGVGI 116
           AD S+ + D+GRG+P  +  ++K     S  E+++ +LHAGGKF   +Y+ SGGLHGVG+
Sbjct: 73  ADNSISITDNGRGVPTGLKMDDKHDPKRSAAEIVMTELHAGGKFDQNSYKVSGGLHGVGV 132

Query: 117 SVVNALSKRVEVAVRRDGQVYEIAFEHG----------DKVTELTVTGTCGRRNTGTSVH 166
           S VNALS  + + +RRDG+ + + F  G          D V    +  T    N GT VH
Sbjct: 133 SCVNALSAWLRLTIRRDGKKHFMEFHRGVPQNRIIEEIDGVAVSPIQVTGETENRGTEVH 192

Query: 167 FWPDTKYFDSPNFSVSRLINNLRAKAVLCPGLEIIFTDKVNNNEHRWLYEDGLKDYLAEG 226
           F  D   F +  +    L   +R  + L  G+ I  TD+    E  + +  G+K ++   
Sbjct: 193 FLADETIFGNIEYHYDILAKRIRELSFLNNGVRIKLTDQRTGKEEDFAFVGGVKGFVEYI 252

Query: 227 VKGYTLLPEEPFTGEFTAQTEAATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQG 286
            K  ++L    F             A+ W     E +   + N IP   GGTH+ GLR  
Sbjct: 253 NKNKSVLHPNIFHISGEKDGVGVEVAMQWNDSYNENVL-CFTNNIPQRDGGTHLTGLRAA 311

Query: 287 LLDAMREFCEFRNLLPRG-VKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAF 345
           +   + ++     +  +  V+ +G+D+ +  + VLS+K+ +P+F+ QTK++L S +  A 
Sbjct: 312 MTRVLNKYINDHEVAKKAKVETSGDDMREGLSCVLSVKVPEPKFSAQTKDKLVSSEVRAP 371

Query: 346 VSGVVKDAFSLWLNEKPQLAEQLAEVCI--ANAHSRMRASKKVVRKK-IASGPALPGKLT 402
           V  VV  A   +L E P  A+ +    +  A A    R ++++ R+K +  G  LPGKL 
Sbjct: 372 VEDVVAKALEEFLLETPNDAKIICSKIVDAARARDAARKAREMTRRKGVLDGVGLPGKLA 431

Query: 403 DCTVQDLNRTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVH 462
           DC  +D  ++E+++VEGDSAGGSAKQ RDR+FQA++PLRGK+LN  +   D++L+S+++ 
Sbjct: 432 DCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARYDKLLSSEQIV 491

Query: 463 DISVAL--GIDPDSDNLEALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVY 520
            +  AL  GI  +  NL+ LRY ++ I+ DAD DG HI TLL   F R    +++ G++Y
Sbjct: 492 TLITALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPEMIERGYIY 551

Query: 521 VAMPPLYRIDCGKEVFYALDDQEKEGVLERLSQKKAKVNVQRFK------GLGEMNPLQL 574
           +A PPL++I  GK+  Y  D+ E    + +L+ + ++++            LGE+    L
Sbjct: 552 IAQPPLFKIKAGKDERYLKDEAEVNAHILKLALQGSELSASEGSTPITGDALGELARAYL 611

Query: 575 RETTMDPNTRRLVQLTIDDAEATDEMMD 602
               +     RL      DA A + +MD
Sbjct: 612 LAQAVVNRLSRLY-----DAGALEAIMD 634



 Score = 65.1 bits (157), Expect = 1e-14
 Identities = 33/70 (47%), Positives = 48/70 (68%), Gaps = 1/70 (1%)

Query: 551 LSQKKAKVNVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDAEATDEMMDMLLGKKRA 610
           L+  +  ++ QR+KGLGEMNP QL ETTMDP  RRL+++ I+DA A D +   L+G    
Sbjct: 746 LADAERNISKQRYKGLGEMNPGQLWETTMDPTVRRLLRVQIEDAIAADGIFTTLMGDD-V 804

Query: 611 DDRRAWLQRN 620
           + RRA+++ N
Sbjct: 805 EPRRAFIESN 814