Pairwise Alignments

Query, 761 a.a., DNA topoisomerase IV subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 887 a.a., DNA gyrase subunit A (EC 5.99.1.3) from Pseudomonas fluorescens FW300-N2E2

 Score =  401 bits (1031), Expect = e-116
 Identities = 267/777 (34%), Positives = 423/777 (54%), Gaps = 84/777 (10%)

Query: 20  EDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKSARTVGDVLGKY 79
           + +YL+Y+M VI+ RALP   DGLKPV RR+++AMSELG   +  YKKSAR VGDV+GKY
Sbjct: 18  KQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDFNKPYKKSARVVGDVIGKY 77

Query: 80  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTEAKLSKFAEILLS 139
           HPHGD+A Y+ +V MAQPFS RY LVDGQGN+G+ D   + AAMRYTE +++K A  LL+
Sbjct: 78  HPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNA-AAMRYTEVRMTKLAHELLA 136

Query: 140 ELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPPHNVREVADATIH 199
           +L + TVDW PN+DGT   P ++P R+P++L+NG +GIAVGMAT+IPPHN+ EV D  + 
Sbjct: 137 DLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEVIDGCLA 196

Query: 200 LIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMRAVWCKEGSD--- 256
           LIDNP   + +LMQY+ GPDFPT A II     + + YR+GRG I MRA    E  D   
Sbjct: 197 LIDNPELTVDELMQYIPGPDFPT-AAIINGRAGIIEAYRTGRGRIYMRARSTVEDIDKVG 255

Query: 257 ----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRIVIVPRSNRVD 312
               IVIT LP+Q++ A+L+E+IA  ++ KKL  + +LRDESD +   R+VI  R   V 
Sbjct: 256 GRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDG-MRVVIELRRGEVP 314

Query: 313 CDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWISFRRETVRSRLQYRLD 372
            ++++N+L+A T L+  F +N+  + +D RP++  L  +L  ++  RRE V  R  + L 
Sbjct: 315 -EVILNNLYAQTQLQSVFGINIVAL-IDGRPRILNLKDLLEAFVRHRREVVTRRTVFELR 372

Query: 373 KVLARLHILQGLLIAYLNLDEVIEIIR--------------------------------- 399
           K   R HIL+G  +A  N+D VI +I+                                 
Sbjct: 373 KARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALISTPWESSAVVAMVERAGADS 432

Query: 400 ----NEDDPKAVLMARFDLTDIQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEEL 455
               N D    +   ++ L+  QA AIL+ +L  L  LE  K+  E  E+  +  +L  +
Sbjct: 433 CRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQEILNQIGELIRI 492

Query: 456 LGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAITVVLSEKGWI 515
           L S  RL  ++++E++    ++GD RR+ +++      LT  D++P E   V +S  G+ 
Sbjct: 493 LNSATRLMEVIREELEVIRAEYGDVRRTEILDAR--LDLTLGDMIPEEERVVTISHGGYA 550

Query: 516 R-------HAKGHDVDCQSLNYKAGDNYLTH-ACGKSNQQAVFLGSDGRSYSLESHTLPS 567
           +        A+      +S      ++Y+ H     S+   +   S G+ Y L+++ +P 
Sbjct: 551 KTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFSSKGKVYWLKTYEIPE 610

Query: 568 A--RGQGEPITGRLNVAEGTTIRQVVMGEEDQLWLVGSDAGYGFVCKGD--------DLL 617
           A    +G P+   L + +G  I  ++  EE       ++  Y F+   +        +  
Sbjct: 611 ASRAARGRPLVNLLPLDDGEYITTMLPVEE------YTEGHYIFMATANGTVKKTPLESF 664

Query: 618 SKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLSK-GKGNK 676
           S+ RS   +    +  +V+    I D +  E++  ++ G++  F   D+  + +  +G +
Sbjct: 665 SRQRSVGLIALELDEGDVLISAAITDGER-EVMLFSDGGKVTRFKESDVRAMGRTARGVR 723

Query: 677 IINIPAAKAKTREEVLSNLMVLPQGASITLYAGKRKLGLKVSDLDNFRGERGRRGAL 733
            + +P       ++++S  M++P+  S  L A  R  G + +  +    +RG +G +
Sbjct: 724 GMRLPEG-----QKLIS--MLIPEEGSQILTASARGYGKRTAISEFPEYKRGGQGVI 773



 Score = 34.7 bits (78), Expect = 2e-05
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 8/149 (5%)

Query: 527 SLNYKAGDNYLTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTT 586
           +L    GD  L  A     ++ V L SDG   +    +   A G+       + + EG  
Sbjct: 674 ALELDEGD-VLISAAITDGEREVMLFSDGGKVTRFKESDVRAMGRTARGVRGMRLPEGQK 732

Query: 587 IRQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSE----VMTPQVIA 642
           +  +++ EE    L  S  GYG      +     R G+ +I +  N      V   QV  
Sbjct: 733 LISMLIPEEGSQILTASARGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQV-- 790

Query: 643 DLDNDEILAITNQGRMLLFPIKDLPQLSK 671
            LD +EI+ I++QG ++   + ++  L +
Sbjct: 791 -LDGEEIMLISDQGTLVRTRVAEVSSLGR 818