Pairwise Alignments

Query, 761 a.a., DNA topoisomerase IV subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 936 a.a., DNA gyrase, A subunit from Pseudomonas stutzeri RCH2

 Score =  389 bits (999), Expect = e-112
 Identities = 280/799 (35%), Positives = 423/799 (52%), Gaps = 98/799 (12%)

Query: 20  EDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKSARTVGDVLGKY 79
           + +YL+Y+M VI+ RALP   DGLKPV RR+++AMSELG   +  YKKSAR VGDV+GKY
Sbjct: 18  KQSYLDYAMSVIIGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKKSARVVGDVIGKY 77

Query: 80  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTEAKLSKFAEILLS 139
           HPHGDSA Y+ +V MAQPFS RY LVDGQGN+G+ D   S AAMRYTE +++K A  LL+
Sbjct: 78  HPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDG-DSAAAMRYTEVRMAKLAHELLA 136

Query: 140 ELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPPHNVREVADATIH 199
           +L + TVDW PN+DGT Q P ++P ++P++L+NG +GIAVGMAT+IPPHN+ EV D  + 
Sbjct: 137 DLEKETVDWVPNYDGTEQIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLGEVIDGCLA 196

Query: 200 LIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMRAVWCKEGSD--- 256
           LIDN +  + +LMQ++ GPDFPT A II     + + YR+GRG I +RA    E  D   
Sbjct: 197 LIDNADITIDELMQFIPGPDFPT-AGIINGRAGIIEAYRTGRGRIYIRARADIEDIDKVG 255

Query: 257 ----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRIVIVPRSNRVD 312
               IVIT LP+Q++ A+L+E+IA  ++ KK+  + +LRDESD +   R+VI  R   V 
Sbjct: 256 GRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDG-MRVVIELRRGEVP 314

Query: 313 CDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWISFRRETVRSRLQYRLD 372
            ++++N+L+A T L+  F +N+  + +D +P+   L ++L  ++  RRE V  R  Y L 
Sbjct: 315 -EVILNNLYAQTQLQSVFGINVVAL-IDGQPRTLNLKELLEAFVRHRREVVTRRTVYELR 372

Query: 373 KVLARLHILQGLLIAYLNLDEVIEIIRNEDDP---KAVLMA------------------- 410
           K   R HIL+G  +A  N+D VI +I+    P   K  L++                   
Sbjct: 373 KARERGHILEGQAVALSNIDPVIAVIKASPTPAEAKDALISTAWESSAVEAMVERAGADA 432

Query: 411 ---------------RFDLTDIQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEEL 455
                          ++ L+  QA AILD +L  L  LE  K+  E  E+  +  +L  +
Sbjct: 433 CRPEGLDPQFGLRDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLSEYQEILTQIGELIRI 492

Query: 456 LGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAITVVLSEKGWI 515
           L +  RL  ++++E++     FGD RR+ ++  E    LT  DL+  E   V +S  G  
Sbjct: 493 LTNPVRLMEVIREELEGVKRDFGDARRTEIL--ESRLDLTLADLITEEERVVTISHGG-- 548

Query: 516 RHAKGHDVDCQSLNYKAG----------DNYLTH-ACGKSNQQAVFLGSDGRSYSLESHT 564
            +AK   +       + G          ++Y+ H     S+   +   S G+ Y L+++ 
Sbjct: 549 -YAKSQPLAAYQAQRRGGRGKAATGVKEEDYVEHLLVANSHTTLLLFSSKGKVYWLKTYE 607

Query: 565 LPSA--RGQGEPITGRLNVAEGTTIRQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRS 622
           +P A    +G P+   L + EG  I  ++         V  +A      +G+D L     
Sbjct: 608 IPEASRTSRGRPLVNLLPLDEGERITAMLQ--------VDLEALRKQAAEGEDDLDDAEG 659

Query: 623 GKALINLPENSEVMTPQVIADLDNDE--------ILAITNQGRMLLFPIKDLPQLSKGKG 674
              +I   +  EV +     D D+DE        I   T  G +   P   L Q S+ + 
Sbjct: 660 --LVIEHDDADEVESD----DADSDEKDEPTGSYIFMATANGTVKKTP---LVQFSRPRT 710

Query: 675 NKIINIPAAKAKTREEVLSNLMVLPQGASITLYA-GKRKLGLKVSDLDNF-RGERGRRGA 732
           + +I +   +  T    L    V      + +++ G + +  K S +    R  RG RG 
Sbjct: 711 SGLIALKLEEGDT----LIAAAVTDGAQEVMMFSDGGKVIRFKESKVRIMGRNARGVRGM 766

Query: 733 LLPRGLQRVTAIEIETSAE 751
            LP G + ++ +  ET A+
Sbjct: 767 RLPEGQRIISMLIPETGAQ 785



 Score = 38.9 bits (89), Expect = 1e-06
 Identities = 36/184 (19%), Positives = 76/184 (41%), Gaps = 14/184 (7%)

Query: 527 SLNYKAGDNYLTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTT 586
           +L  + GD  +  A     Q+ +     G+    +   +         + G + + EG  
Sbjct: 715 ALKLEEGDTLIAAAVTDGAQEVMMFSDGGKVIRFKESKVRIMGRNARGVRG-MRLPEGQR 773

Query: 587 IRQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQV--IADL 644
           I  +++ E     L  S  GYG     ++   + R G+ +I +  N E   P V  +  L
Sbjct: 774 IISMLIPETGAQILTASVRGYGKRTAMEEFPRRGRGGQGVIAMVTN-ERNGPLVGAVQVL 832

Query: 645 DNDEILAITNQGRMLLFPIKDLPQLSK----------GKGNKIINIPAAKAKTREEVLSN 694
           + +EI+ I++QG ++   + ++  L +           KG  ++ +   +  + E+VL +
Sbjct: 833 EGEEIMLISDQGTLVRTRVDEVSSLGRNTQGVTLIKLSKGEHLVGLERVQEPSEEDVLED 892

Query: 695 LMVL 698
           +  L
Sbjct: 893 IEAL 896