Pairwise Alignments

Query, 761 a.a., DNA topoisomerase IV subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 858 a.a., DNA topoisomerase IV subunit A from Synechococcus elongatus PCC 7942

 Score =  379 bits (973), Expect = e-109
 Identities = 284/816 (34%), Positives = 415/816 (50%), Gaps = 97/816 (11%)

Query: 1   MSTEISFDGVEQL---PLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSEL 57
           M+  I F+G +++    L +  + +YL Y+M VI+ RALP   DGLKPVQRRI+YAM EL
Sbjct: 1   MTDSIQFNGADRILPTALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMHEL 60

Query: 58  GLSASAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-D 116
           GL+    ++KSAR VGDVLGKYHPHGD A Y+A+V + Q FS RYPL+ G GN+G+ D D
Sbjct: 61  GLTPDRPFRKSARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLAGHGNFGSIDND 120

Query: 117 PKSFAAMRYTEAKLSKFAEI-LLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVT 175
           P   AAMRYTE +L+  + + LL E+G+ TVD+  NFD + QEP +LPA+LP +LLNG +
Sbjct: 121 PP--AAMRYTETRLAPVSHVALLEEIGEETVDFVANFDNSQQEPSVLPAQLPFLLLNGCS 178

Query: 176 GIAVGMATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEK 235
           GIAVGMAT+IPPHN+ E+ DA I LID P     DL++YV GPDFPT  E+I     L+ 
Sbjct: 179 GIAVGMATNIPPHNLGEIVDALIALIDRPQLSDRDLLRYVPGPDFPTGGEVIGSQGILD- 237

Query: 236 IYRSGRGSIKMRAVWCKEGSD----------IVITALPHQVSGAKLLEQIAAQMRAKKLP 285
            Y  GRGSI +R +   E             I++T LP+QVS A  +E++A  +   KL 
Sbjct: 238 AYLEGRGSIPVRGIARIEEIQPGKGRHRRPVIIVTELPYQVSKAGWIEKVADLVNDGKLQ 297

Query: 286 MVEDLRDESDHENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQV 345
            + D+RDESD E   R+VI  R +    D ++  L+  T L+ +F   L  I ++ +PQ 
Sbjct: 298 GIADIRDESDREG-MRVVIELRRD-AQADKVLEQLYKRTALQSNFGAILLAI-VEGQPQQ 354

Query: 346 KGLVQILSEWISFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDD-- 403
             L Q+L +++SFR  T+R R  + L++   RL IL+GLL +  +LD +IEI+R   D  
Sbjct: 355 LSLKQLLEQFLSFREGTLRRRYGHELEQTERRLMILEGLLRSLSDLDGLIEILRQSPDGG 414

Query: 404 -PKAVLMARFDLTDIQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRL 462
             +A L   FDL + QADA+L   +R +  LE+ +++ E   L +++ +L+ LLG    L
Sbjct: 415 TARARLQVHFDLNERQADAVLSMPMRRITSLEQEQLQQEAANLREQQARLQTLLGDRPTL 474

Query: 463 NNLLKKEIKADADKFGDDRRSPLVEREEAKALTER------------------------- 497
              LKK+++    +FG  RR+ L E         R                         
Sbjct: 475 LKALKKDLRDLKRRFGSPRRTRLPEIPPEAIAAPRQVTAPVAPISAPTPATAGPIQGELI 534

Query: 498 ----------DLMPSEAITVVLSEKGWIRHAKGHDVDCQS-------LNYKAGDNYLTH- 539
                     D  P  A      E  W+  +    +   S       L  K+G    T  
Sbjct: 535 FNSATDSAVPDSAPVIAPRFAFQESTWLCLSDREQLQAASATELEPWLKAKSGAQERTDF 594

Query: 540 ----ACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQVVMGEE 595
                     Q  + + ++GR+Y      +          TGR + A   T+   +  EE
Sbjct: 595 PKVLQWADPRQDLLVITAEGRAYRRSLREVHPGPIANLLPTGRQSTAIAATLLLPLASEE 654

Query: 596 DQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQ 655
             L L+ S      +    +L   +  G  L+ L E   +    + A     E+L  ++ 
Sbjct: 655 RSLLLLSSQGRVKRLAL-TELAEISNRGLQLLKLAEEEIIQAACLCA--PQQEVLLGSSG 711

Query: 656 GRMLLFPIKDLP---QLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYA---- 708
           GR+L   + +LP   ++S+G+   +      + +  E+ L  L  LP G  + L +    
Sbjct: 712 GRLLRLSLSELPLASRISRGQPRLL------RLREGEQPLGCLS-LPSGQDLLLVSTLGL 764

Query: 709 -GKRKLGL----KVSDLDN----FRGERGRRGALLP 735
             +  LGL    +  DL N    F  +R R  ALLP
Sbjct: 765 VKRLPLGLLRLCRAGDLGNNAFRFTDKRDRLIALLP 800