Pairwise Alignments

Query, 761 a.a., DNA topoisomerase IV subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 931 a.a., DNA gyrase subunit A from Sinorhizobium meliloti 1021

 Score =  395 bits (1014), Expect = e-114
 Identities = 256/736 (34%), Positives = 401/736 (54%), Gaps = 75/736 (10%)

Query: 9   GVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKS 68
           G+E + + +  + +YL+Y+M VI+ RALP + DGLKPV RRI+Y MSELG+  + KY K 
Sbjct: 15  GIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKC 74

Query: 69  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 127
           AR  GDV+GKYHPHG++A Y+A+  MAQ +S R PL+DGQGN+G+ D DP   AA RYTE
Sbjct: 75  ARVTGDVMGKYHPHGNAAIYDALARMAQDWSLRLPLIDGQGNFGSVDGDPP--AAERYTE 132

Query: 128 AKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187
            +L K A  LL +L + TVD++ N+DGT+ EP ++PA+ P++L+NG  GIAVGMAT+IPP
Sbjct: 133 CRLQKAAHSLLDDLDKDTVDFRDNYDGTLHEPVVVPAKFPNLLVNGAGGIAVGMATNIPP 192

Query: 188 HNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMR 247
           HN+ EV D  I LIDNP   L +LMQ + GPDFPT A +I     + + Y +GRGS+ MR
Sbjct: 193 HNLVEVIDGCIALIDNPAIELPELMQIIPGPDFPTGA-LILGRSGIRQAYETGRGSVIMR 251

Query: 248 A-----VWCKEGSDIVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302
                     +   I+IT +P+QV+ A ++E++A  +R K++  + DLRDESD +     
Sbjct: 252 GRAHIEPMRGDREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLRDESDRQGYR-- 309

Query: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLD-NRPQVKGLVQILSEWISFRRE 361
           V++      + ++++N L+  T L+ SF    NM+ L+  +P+   L+ +L  ++SFR +
Sbjct: 310 VVIELKRDANAEVILNQLYRYTPLQTSF--GCNMVALNGGKPEQMTLLDMLRAFVSFRED 367

Query: 362 TVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAV---LMAR------- 411
            V  R +Y L K   R H+L GL IA  N+DEVI++IR   DP+     LM R       
Sbjct: 368 VVSRRTKYLLRKARERAHVLVGLAIAVANIDEVIKLIRQAPDPQTAREQLMERRWPAHDV 427

Query: 412 -------------------FDLTDIQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKL 452
                              ++L++ QA AILD +L+ L  L   +I  E +++ +E K  
Sbjct: 428 DALIRLIDDPRHRINDDATYNLSEEQARAILDLRLQRLTALGRDEIGDELNKIGEEIKDY 487

Query: 453 EELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAITVVLSEK 512
            ++L S  R+  ++K E+ A  D+FG  RR+ +   E    + + DL+  E + V +S  
Sbjct: 488 LDILSSRLRIMQIVKNELTAVRDEFGTPRRTEIA--EGGPDMDDEDLIAQEDMVVTVSHL 545

Query: 513 GWIRHAKGHDVDCQSLNYKAGDNYLTH--------ACGKSNQQAVFLGSDGRSYSLESHT 564
           G+I+         Q    K      T             ++   +F  S G  Y  +   
Sbjct: 546 GYIKRVPLTTYRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 605

Query: 565 LP--SARGQGEPITGRLNVAEGTTIRQVV-MGEEDQLW-----LVGSDAGYGFVCKGDDL 616
           LP  + + +G+ +   L +  G  I  ++ + E++  W     +  +  G     K  D 
Sbjct: 606 LPIGTPQSRGKALINMLPLEPGERITTIMPLPEDETTWENLDVMFSTTRGTVRRNKLSDF 665

Query: 617 LSKNRSGKALINL-PENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKD---------- 665
           +  NR+GK  + L  E  E+++     +   D+++  T  G+ + FP+ D          
Sbjct: 666 VQVNRNGKIAMKLEEEGDEILSVDTCTEF--DDVVLTTALGQCIRFPVADVRVFAGRNSI 723

Query: 666 -LPQLSKGKGNKIINI 680
            +  +S G G++II++
Sbjct: 724 GVRGISLGDGDRIISM 739



 Score = 26.2 bits (56), Expect = 0.008
 Identities = 23/134 (17%), Positives = 50/134 (37%), Gaps = 30/134 (22%)

Query: 568 ARGQGEPITGRLNVAEGTTIRQVVMGEEDQLWLVGSDA---------------------- 605
           A  + EP      +      R+ + GEE+++ LVG +                       
Sbjct: 743 AHVEAEPWERAAYLKRSAAERRALTGEEEEIVLVGEEVTNGGELTNERYEELKAREQFIL 802

Query: 606 -----GYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADL---DNDEILAITNQGR 657
                G+G      D  +  R GK +     +      +++A      ND+I+ +++ G+
Sbjct: 803 TVSMKGFGKRSSSYDFRTSGRGGKGIRATDTSKTAEIGELVAAFPIEHNDQIMLVSDGGQ 862

Query: 658 MLLFPIKDLPQLSK 671
           ++  P++ +   S+
Sbjct: 863 LIRVPVEGIRLASR 876