Pairwise Alignments

Query, 761 a.a., DNA topoisomerase IV subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 901 a.a., DNA gyrase subunit A (RefSeq) from Shewanella amazonensis SB2B

 Score =  392 bits (1007), Expect = e-113
 Identities = 273/781 (34%), Positives = 418/781 (53%), Gaps = 95/781 (12%)

Query: 20  EDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKSARTVGDVLGKY 79
           +++YL+Y+M VI+ RALP + DGLKPV RR+++AM+EL    +  YKKSAR VGDV+GKY
Sbjct: 18  KNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNKPYKKSARVVGDVIGKY 77

Query: 80  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTEAKLSKFAEILLS 139
           HPHGDSA Y+ +V MAQPFS RY LVDGQGN+G+ D   + AAMRYTE ++ K A  LL+
Sbjct: 78  HPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDAA-AAMRYTEIRMEKLAHELLA 136

Query: 140 ELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPPHNVREVADATIH 199
           +L + TVD+ PN+DGT Q P +LP ++P++L+NG +GIAVGMAT+IPPHN+ EV    + 
Sbjct: 137 DLEKETVDFVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNLTEVVKGCLA 196

Query: 200 LIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMRAVWCKEGSD--- 256
           LI+ P   +  LM+Y+ GPDFPT A II     +E+ YR+GRG   MRA    E  D   
Sbjct: 197 LIEEPELSIEQLMEYIPGPDFPT-AAIINGKKGIEEAYRTGRGKAIMRARAEVEIEDNGR 255

Query: 257 --IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRIVIVPRSNRVDCD 314
             I++T +P+QV+ A+L+E+IA  ++ KK+  +  LRDESD +   RIVI  +   V  +
Sbjct: 256 ERIIVTEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDG-MRIVIEIKRGEVG-E 313

Query: 315 LLMNHLFASTDLEKSFRVNLNMIGLDN-RPQVKGLVQILSEWISFRRETVRSRLQYRLDK 373
           +++N+L+A T ++ SF   +NM+ L N +P++  L ++L  +I  RRE V  R  Y L K
Sbjct: 314 VVLNNLYAQTQMQSSF--GINMVALANGQPKLFNLKEMLEAFILHRREVVTRRTVYELRK 371

Query: 374 VLARLHILQGLLIAYLNLDEVIEIIR---NEDDPKAVLMAR------------------- 411
              R HIL+ L +A  N+D +I +I+   +  D KA L+A+                   
Sbjct: 372 ARDRAHILEALAVALANIDPIIALIKASASPSDAKAGLIAKGWELGTVKAMLEKAGDDAA 431

Query: 412 ---------------FDLTDIQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELL 456
                          + +T+ QA AILD +L  L  LE  KI  E +EL +    L  +L
Sbjct: 432 RPEWLEPEFGIRDGLYFMTEPQAQAILDLRLHKLTGLEHEKILQEYEELLEIIAGLLHIL 491

Query: 457 GSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAITVVLSEKGWIR 516
            S  RL  ++K+E++   ++FGD+RR+ +     A  ++  DL+  E + V LS  G+ +
Sbjct: 492 RSPERLMEVIKEELELILEQFGDNRRTEI--NASAVDISLEDLINEEDVVVTLSHLGYAK 549

Query: 517 HAKGHDVDCQSLNYKA-------GDNYLTHACGKSNQQAVFLGSD-GRSYSLESHTLP-- 566
           +    D   Q    K         ++++      +    +   SD G+ Y L+ + LP  
Sbjct: 550 YQPLTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKLYWLKVYQLPLA 609

Query: 567 SARGQGEPITGRLNVAEG---TTIRQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSG 623
           S + +G PI   L + EG   T I  V   EE +  L+ +  G        +      +G
Sbjct: 610 SRQARGRPIVNLLPLQEGERITAILPVREYEEGKYILMATSHGTVKKTALTEYSRPRSNG 669

Query: 624 KALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLSKGKGNKIINIPAA 683
              +NL +  +++   +     + EI+  ++ G+++ F   +   +    GN +++    
Sbjct: 670 IIAVNLKDGDQLIGVDITD--GSSEIMLFSDAGKVVRFKEGEEVAVVDENGNPVLD---- 723

Query: 684 KAKTREEVLSNLMVLPQGASITLYAGKRKLGLKVSDLDNFRGERGRRGALLPRGLQRVTA 743
                           +G     + G R +G         RG  G RG  L  G QRV +
Sbjct: 724 ---------------EEGKPQINFKGVRPMG---------RGATGVRGIALEEG-QRVVS 758

Query: 744 I 744
           +
Sbjct: 759 L 759



 Score = 29.6 bits (65), Expect = 7e-04
 Identities = 23/99 (23%), Positives = 50/99 (50%), Gaps = 7/99 (7%)

Query: 569 RGQGEPITGRLNVA--EGTTIRQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKAL 626
           R  G   TG   +A  EG  +  +++ ++D   L  +  G+G   +  +  +K+R+ K +
Sbjct: 736 RPMGRGATGVRGIALEEGQRVVSLIVPKDDSAILTVTANGFGKRTELAEYPAKSRATKGV 795

Query: 627 INL---PENSEVMTPQVIADLDNDEILAITNQGRMLLFP 662
           +++     N  V+    +   +NDEI+ I+++G ++  P
Sbjct: 796 VSIKVTERNGPVVGAVQVG--ENDEIMLISDKGTLVRTP 832