Pairwise Alignments

Query, 761 a.a., DNA topoisomerase IV subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 943 a.a., DNA gyrase, subunit A (NCBI) from Rhodospirillum rubrum S1H

 Score =  390 bits (1003), Expect = e-112
 Identities = 250/694 (36%), Positives = 386/694 (55%), Gaps = 58/694 (8%)

Query: 22  AYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKSARTVGDVLGKYHP 81
           +YL+Y+M VI+ RALP + DGLKPV RRI+Y+M E G   +  Y+KSAR VGDV+GKYHP
Sbjct: 25  SYLDYAMSVIVSRALPDVRDGLKPVHRRILYSMKESGYEFNKPYRKSARIVGDVMGKYHP 84

Query: 82  HGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTEAKLSKFAEILLSEL 141
           HGD + Y+AMV M Q F+ R PL+DGQGN+G+ D  ++ AAMRYTEA+++K A  LL ++
Sbjct: 85  HGDQSIYDAMVRMVQNFAMRLPLIDGQGNFGSMDGDRA-AAMRYTEARMAKAAHSLLDDI 143

Query: 142 GQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPPHNVREVADATIHLI 201
            + TVD+QPN+D T +EP +LPAR P++L+NG  GIAVGMAT+IPPHN+ EV DA   +I
Sbjct: 144 DKETVDFQPNYDETTREPIVLPARFPNLLVNGAGGIAVGMATNIPPHNLGEVIDACCAMI 203

Query: 202 DNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMRAVWCKEG-----SD 256
           DNP     +L++ V GPDFPT   I+  +  +   + +GRGS+ MR     E        
Sbjct: 204 DNPAVTAEELLELVPGPDFPTGGTILGRS-GVRAAHLTGRGSVIMRGRTHFEDISGGRQA 262

Query: 257 IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRIVIVPRSNRVDCDLL 316
           I++T +P+QV+ A ++E+IA  +R KKL  + D+RDESD     R+VI  + + +  +++
Sbjct: 263 IIVTEVPYQVNKASMVEKIAELVREKKLEGISDIRDESDRRG-VRVVIEVKRDAM-AEVV 320

Query: 317 MNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWISFRRETVRSRLQYRLDKVLA 376
           +N LF  T L+ SF VN+  +    +P++  L  I+  +I+FR E +R R  + L K   
Sbjct: 321 LNQLFRYTPLQTSFGVNMLALN-GGKPELLALRPIIEAFITFREEVIRRRTIFELGKARE 379

Query: 377 RLHILQGLLIAYLNLDEVIEIIRNEDDPKAV---LMAR---------------------- 411
           R H L GL IA  NLD VI++IR   DP+A    LMAR                      
Sbjct: 380 RAHTLVGLAIAVANLDPVIKLIREAPDPQAAREGLMARDWPAMDVEPLIKLIDEPGRMVI 439

Query: 412 ---FDLTDIQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKK 468
              + L++IQA AILD +L  L  LE  K+ GE  E+ ++ ++   +L S  RL  +++ 
Sbjct: 440 DGVYRLSEIQARAILDLRLHRLTGLERDKLHGELIEIGQQIEEYLHILRSRARLFEIMRA 499

Query: 469 EIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAITVVLSEKGWIRHAKGHDVDCQ-- 526
           E+    + +   RR+ L E E    +   DL+  E + V ++  G+I+         Q  
Sbjct: 500 ELVEMKEAYATPRRTTLEENEFEHDI--EDLIQREEMVVTVTNTGYIKRVPLTTYRAQRR 557

Query: 527 ------SLNYKAGDNYLTHACGKSNQQAVFLGSDGRSYSLESHTLP--SARGQGEPITGR 578
                  ++ +  D   T     ++   +F  SDG  Y ++ + LP  + + +G+ +   
Sbjct: 558 GGRGRAGMSMRDEDFVTTIFVVNTHAPLLFFSSDGMVYKMKVYRLPLGTPQARGKAMVNI 617

Query: 579 LNVAEGTTIRQVV-MGEEDQLW-----LVGSDAGYGFVCKGDDLLSKNRSGKALINLPEN 632
           + + EG  I  V+ + E++  W     +  ++ G     +  D  +   +GK  + L E 
Sbjct: 618 MPLNEGERITTVMPLPEDEGAWDQLDVMFATETGNVRRNRLSDFTNVMSNGKIAMKLDEG 677

Query: 633 SEVMTPQVIADLDNDEILAITNQGRMLLFPIKDL 666
             ++   V    D  ++L  TN G+ + F + D+
Sbjct: 678 DHLI--GVATCTDEQDVLLTTNLGKAIRFAVGDV 709