Pairwise Alignments

Query, 761 a.a., DNA topoisomerase IV subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 908 a.a., DNA gyrase subunit GyrA from Phaeobacter inhibens DSM 17395

 Score =  380 bits (977), Expect = e-109
 Identities = 245/697 (35%), Positives = 385/697 (55%), Gaps = 61/697 (8%)

Query: 22  AYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKSARTVGDVLGKYHP 81
           +YL+Y+M VI+ RA+P + DGLKPV RRI+YAM E+G S    Y+KSAR VGDV+GKYHP
Sbjct: 25  SYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHEVGNSHDKPYRKSARPVGDVMGKYHP 84

Query: 82  HGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTEAKLSKFAEILLSEL 141
           HGDSA Y+A+V MAQ FS   PL+DGQGN+G+ D     AAMRYTE ++ K A  +L+++
Sbjct: 85  HGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNP-AAMRYTEVRMDKPAASILADI 143

Query: 142 GQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPPHNVREVADATIHLI 201
            + TVD+Q N+DG  +EP +LPAR P++L+NG  GIAVGMAT+IPPHN+ EV DAT+ LI
Sbjct: 144 EKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEVIDATLALI 203

Query: 202 DNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMRAVW-----CKEGSD 256
           ++P+     L+ YV GPDFPT   ++       K Y  GRGS+ +RA        K+   
Sbjct: 204 EDPDLTSEQLIDYVPGPDFPT-GGVMLGRSGARKAYLEGRGSVVIRAKTRVEEIRKDRYA 262

Query: 257 IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRIVIVPRSNRVDCDLL 316
           IV+  +P+QV+ A ++E+IA Q+R KK+  V  ++DESD  N  R+V+  + +    +++
Sbjct: 263 IVVEEIPYQVNKAAMIEKIAEQVREKKIEGVSHVQDESD-RNGVRVVVELKRD-ATAEVV 320

Query: 317 MNHLFASTDLEKSFRVNLNMIGLD-NRPQVKGLVQILSEWISFRRETVRSRLQYRLDKVL 375
           +N L+  + ++  F    NM+ L+  RP+   L + L+ ++ FR + +  R  Y L K  
Sbjct: 321 LNQLYRFSPMQTHF--GCNMLALNGGRPEQLTLRRFLTSFLDFREDVIARRTAYDLRKAR 378

Query: 376 ARLHILQGLLIAYLNLDEVIEIIRNE---------------------------DDPKAVL 408
            R HIL GL +A  N+DEV+  IR                             DDP   +
Sbjct: 379 ERSHILCGLAVAVSNVDEVVATIRASADAAEARHKLMTRRWPAVDIAPYIRLIDDPTHTM 438

Query: 409 M--ARFDLTDIQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLL 466
                ++L+++QA AIL+ +L+ L ++   ++  E +EL  + K+  E+L S  R+  ++
Sbjct: 439 NDDGTYNLSEVQARAILELRLQRLTQIGVKEVTDELEELAGKIKEYLEILSSRERILGII 498

Query: 467 KKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAITVVLSEKGWIRHAKGHDVDCQ 526
             E++   D F   RR+ +V  + +  + + DL+  E + V ++  G+I+     D   Q
Sbjct: 499 SDELREVRDNFAVPRRTEIV--DWSGDMEDEDLIEREDMVVTITSGGYIKRTPLVDFRAQ 556

Query: 527 --------SLNYKAGDNYLTHACGKSNQQAVFLGSDGRSYSLESHTLPSA--RGQGEPIT 576
                    +  K  D         ++ Q +F  +DG  Y L++  LP      +G+ I 
Sbjct: 557 KRGGKGLSGMQTKEEDVVTNLFVANTHTQLLFFTTDGMVYKLKTWRLPQGGRTSKGKAIV 616

Query: 577 GRLNVAEGTTIRQVVM-----GEEDQLWLVGSDAGYGFVCKG--DDLLSKNRSGKALINL 629
             L +  G +I  ++       E + L +V + +G G V +    D  +  R+GK  + L
Sbjct: 617 NILPIPPGVSIAAIMPVDVPDDEWENLQVVFATSG-GDVRRNRLSDFTNVRRNGKIAMKL 675

Query: 630 PENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDL 666
           PE+  V         ++D+++ +TN GR + F   D+
Sbjct: 676 PEDGSVKLVNARICSEDDDVMLVTNSGRAIRFRSTDV 712