Pairwise Alignments

Query, 761 a.a., DNA topoisomerase IV subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 879 a.a., DNA gyrase, A subunit (RefSeq) from Shewanella loihica PV-4

 Score =  400 bits (1028), Expect = e-115
 Identities = 267/743 (35%), Positives = 410/743 (55%), Gaps = 70/743 (9%)

Query: 20  EDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKSARTVGDVLGKY 79
           +++YL+Y+M VI+ RALP + DGLKPV RR+++AM+EL    +  YKKSAR VGDV+GKY
Sbjct: 18  KNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNKPYKKSARVVGDVIGKY 77

Query: 80  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTEAKLSKFAEILLS 139
           HPHGDSA Y+ +V MAQPFS RY LVDGQGN+G+ D   + AAMRYTE ++ K A  LL+
Sbjct: 78  HPHGDSAVYDTIVRMAQPFSMRYTLVDGQGNFGSVDGDAA-AAMRYTEIRMDKLAHQLLA 136

Query: 140 ELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPPHNVREVADATIH 199
           +L + TVD+ PN+DGT Q P +LP R+P +L+NG +GIAVGMAT+IPPHN+ EV    + 
Sbjct: 137 DLEKETVDYVPNYDGTEQIPAVLPTRIPALLVNGSSGIAVGMATNIPPHNLSEVISGCLA 196

Query: 200 LIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMRAVWCKEGSD--- 256
           LID P+  +  LM+++ GPDFPT A I+     +E  Y++GRG   MRA    E  D   
Sbjct: 197 LIDEPSLSIEQLMEHIPGPDFPT-AAIVNGRKGIEDAYKTGRGKAVMRARATVETEDNGR 255

Query: 257 --IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRIVIVPRSNRVDCD 314
             I++T +P+QV+ A+L+E+IA  ++ KK+  +  LRDESD +   RIVI  +   V  +
Sbjct: 256 ERIIVTEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDG-MRIVIEVKRGEVG-E 313

Query: 315 LLMNHLFASTDLEKSFRVNLNMIGLDN-RPQVKGLVQILSEWISFRRETVRSRLQYRLDK 373
           +++N+L+A T L+ SF   +NM+ L N +P++  L ++L  +I  RRE V  R  + L K
Sbjct: 314 VILNNLYAQTQLQTSF--GINMVALTNGQPKLFNLKEMLECFILHRREVVTRRTVFELRK 371

Query: 374 VLARLHILQGLLIAYLNLDEVIEIIRNEDDP---KAVLMAR------------------- 411
              R HIL+ L IA  N+D +I +I+    P   K  L+++                   
Sbjct: 372 ARERAHILEALAIALANIDPIIALIKASPTPAEAKTKLVSQGWALGNVQGMLEKAGDDAA 431

Query: 412 ---------------FDLTDIQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELL 456
                          + LT+ QA AILD +L  L  LE  KI  E +EL +    L  +L
Sbjct: 432 RPEWLSAEFGIRDGLYYLTEQQAQAILDLRLHKLTGLEHEKILSEYEELLELIAALLYIL 491

Query: 457 GSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAITVVLSEKGWIR 516
            S  RL  ++K+E++   + FGD+RR+ L     A  ++  DL+  E + V LS  G+ +
Sbjct: 492 RSPERLMEVIKEELQEVLEVFGDERRTEL--NASAVDISLEDLINEEDVVVTLSHLGYAK 549

Query: 517 HAKGHDVDCQSLNYKA-------GDNYLTHACGKSNQQAVFLGSD-GRSYSLESHTLP-- 566
           +    D   Q    K         ++++      +    +   SD G+ Y L+ + LP  
Sbjct: 550 YQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQLPLA 609

Query: 567 SARGQGEPITGRLNVAEGTTIRQVVMGEE---DQLWLVGSDAGYGFVCKGDDLLSKNRSG 623
           S + +G PI   L +AEG  I  ++   E   D+  ++ +  G       D       +G
Sbjct: 610 SRQARGRPIINLLPLAEGERITAILPVREYDADKYVIMATSHGTVKKTSLDQYSRPRANG 669

Query: 624 KALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLSKGKGNKIINIPAA 683
              +NL +  +++    I + DN E++  +N+G+++ F    +    +G G     +   
Sbjct: 670 IIAVNLKDGDQLIGVD-ITNGDN-EVMLFSNEGKVVRFSEDQV----RGMGRTATGVRGI 723

Query: 684 KAKTREEVLSNLMVLPQGASITL 706
           K +  + V+S ++    GA +T+
Sbjct: 724 KLEDGQSVVSLIVPKNDGAILTV 746



 Score = 42.4 bits (98), Expect = 1e-07
 Identities = 30/150 (20%), Positives = 72/150 (48%), Gaps = 10/150 (6%)

Query: 527 SLNYKAGDNYLTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITG--RLNVAEG 584
           ++N K GD  +       + + +   ++G+        +   RG G   TG   + + +G
Sbjct: 672 AVNLKDGDQLIGVDITNGDNEVMLFSNEGKVVRFSEDQV---RGMGRTATGVRGIKLEDG 728

Query: 585 TTIRQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINL---PENSEVMTPQVI 641
            ++  +++ + D   L  ++ GYG   + D+  +K+R+ K ++++     N  V+    +
Sbjct: 729 QSVVSLIVPKNDGAILTVTENGYGKRTELDEYPAKSRATKGVVSIKVSERNGAVV--GAV 786

Query: 642 ADLDNDEILAITNQGRMLLFPIKDLPQLSK 671
             L+NDEI+ I+++G ++  P   +  + +
Sbjct: 787 QVLENDEIMLISDKGTLVRTPASGVSTIGR 816