Pairwise Alignments

Query, 761 a.a., DNA topoisomerase IV subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 873 a.a., DNA gyrase, A subunit from Dechlorosoma suillum PS

 Score =  379 bits (974), Expect = e-109
 Identities = 269/812 (33%), Positives = 429/812 (52%), Gaps = 95/812 (11%)

Query: 11  EQLP--LRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKS 68
           E LP  L +    +YL+Y+M VI+ RALP + DGLKPV RR+++AM ELG   +  YKKS
Sbjct: 7   ETLPISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELGNDWNKAYKKS 66

Query: 69  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTEA 128
           AR VGDV+GKYHPHGD+A Y+ +V MAQ FS RY LVDGQGN+G+ D   + AAMRYTE 
Sbjct: 67  ARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNA-AAMRYTEV 125

Query: 129 KLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPPH 188
           ++++    LL ++ + TVD+ PN+DG+ QEP +LPAR+P++L+NG +GIAVGMAT+IPPH
Sbjct: 126 RMARIGHQLLEDIDKETVDFGPNYDGSEQEPLILPARIPNLLINGSSGIAVGMATNIPPH 185

Query: 189 NVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMRA 248
           N+ EV  A + L+ NPN  + +L+  +  PDFPT A II     + + YR+GRG + MRA
Sbjct: 186 NLGEVVAACLALLQNPNLTIDELIDIIPAPDFPT-AGIIYGVAGVREGYRTGRGRVVMRA 244

Query: 249 VWCKEGSD------IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302
               E  D      ++I  LP+QV+   LLE+I   +  K++  + DLRDESD ++  R+
Sbjct: 245 KTHVEDLDKGNRQALIIDELPYQVNKRTLLEKIGELVNEKRIEGISDLRDESD-KSGMRV 303

Query: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGL-DNRPQVKGLVQILSEWISFRRE 361
           VI  +   +  ++++N+LF  T L+ +F   +NM+ L D +P++  L Q+L  +++ RRE
Sbjct: 304 VIELKRGEMP-EVVLNNLFKMTQLQDTF--GMNMVALVDGQPRLLNLKQMLECFLAHRRE 360

Query: 362 TVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIR---NEDDPKAVLMAR------- 411
            +  R  + L K   + H  +GL +A  N+DE+I +I+      D +  LMAR       
Sbjct: 361 VLNRRTVFELRKAREKAHTQEGLAVALDNVDEIIALIKAAPTPADARRELMARMWVSATV 420

Query: 412 ---------------------------FDLTDIQADAILDTKLRHLAKLEEMKIRGEQDE 444
                                      + LT+ QA AIL+ +L+ L  LE  KI  +  E
Sbjct: 421 TEMLARASLDATRPEGIAPEYGLSAQGYRLTEAQAQAILELRLQRLTGLERDKIVADYKE 480

Query: 445 LEKERKKLEELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEA 504
           L ++   L ++L    R+  ++ +E+ A  D+FGDDRRS +V    A+ L   DL+  + 
Sbjct: 481 LLEKIADLMDILARPERVTEIIGEELTAIRDQFGDDRRSEIV--AYAQDLGIEDLITPQD 538

Query: 505 ITVVLSEKGWIRHAKGHDVDCQSLNYKA-------GDNYLTHA-CGKSNQQAVFLGSDGR 556
           + V LS  G+I+     D   Q    +         D+++ H     ++   +   + GR
Sbjct: 539 MVVTLSHTGYIKSQPLADYRAQRRGGRGKQAAAMKDDDFVDHLFVANTHDYILCFSNRGR 598

Query: 557 SYSLESHTLP--SARGQGEPITGRLNVAEGTTIRQVVMGEEDQLWLVGSDAGYGFVCKGD 614
            Y L+ + +P  S   +G+PI     + EG  I  ++  +E       SD  Y F+C   
Sbjct: 599 CYWLKVYEVPQGSRISRGKPIINMFPMEEGEQINAILPVKE------FSDDKYVFMCTVQ 652

Query: 615 DLLSK---------NRSGKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLF---P 662
             + K          ++G   ++L E   ++   +       +I+ +++ G+ + F    
Sbjct: 653 GTVKKTSLANFSNPRKAGIIAVDLDEGDYLIGADLTT--GQSDIVLVSDGGKAVWFGEDQ 710

Query: 663 IKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYAGKRKLGLKVSDLDN 722
           ++ + + S+G       +     +  + V+S L+V        L A +   G +    D 
Sbjct: 711 VRPMGRQSRG-------VRGMMLQEGQSVIS-LLVAESEEETVLVATENGYGKRTRLGDF 762

Query: 723 FRGERGRRGALLPRGLQR---VTAIEIETSAE 751
            R  RG +G +     +R   + A ++ T A+
Sbjct: 763 RRSSRGTQGVMAIAASERNGKIVAAKLVTDAD 794