Pairwise Alignments

Query, 761 a.a., DNA topoisomerase IV subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 812 a.a., DNA gyrase, A subunit (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  401 bits (1030), Expect = e-116
 Identities = 243/604 (40%), Positives = 363/604 (60%), Gaps = 32/604 (5%)

Query: 11  EQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKSAR 70
           +Q+ + K    +YL YS+ VI+ RA+P   DGLKPV RRI++A  ELG   +   KKSAR
Sbjct: 3   QQVSIEKELRKSYLEYSLSVIIGRAIPDARDGLKPVHRRIMFAQHELGNGYTRPPKKSAR 62

Query: 71  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTEAKL 130
            VGDV+GKYHPHGDSA Y+A+V MAQ FS R PLVDGQGN+G+ D   + AAMRYTE ++
Sbjct: 63  VVGDVIGKYHPHGDSAVYDALVRMAQDFSMRDPLVDGQGNFGSIDGDAA-AAMRYTEVRM 121

Query: 131 SKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPPHNV 190
           S+ A   L+++ + TVD++PN+D T+ EP +LP ++P++LLNG +GIAVGMAT+IPPHN+
Sbjct: 122 SRLAGEFLADIDKETVDFRPNYDNTLLEPSVLPTKVPNLLLNGSSGIAVGMATNIPPHNL 181

Query: 191 REVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMRA-V 249
            E+  A +H++D P   + DLM +VKGPDFPT A  +     L   Y +GRG++K+R  V
Sbjct: 182 GELCGALLHIVDEPGCTVEDLMDHVKGPDFPT-AGFVYAGQGLYDAYTTGRGTVKVRGKV 240

Query: 250 WCKEGSD----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRIVIV 305
             +E       IVI  +P  ++ + L+E+IAA +  +K+  V DLRDESD +   R+VI 
Sbjct: 241 EIEERKKGLQAIVIREIPFALNKSSLVEKIAALVNERKIDGVADLRDESDRKG-IRVVID 299

Query: 306 PRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWISFRRETVRS 365
            +   +  D+++N L+  T LE SF +N+  + + NRPQ+  L Q L  ++  RRE +  
Sbjct: 300 LKRGTIP-DIVVNALYKYTPLESSFGINMLAV-VGNRPQLLNLKQALEIFLEHRREVIIR 357

Query: 366 RLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIR---NEDDPKAVLMARFDLTDIQADAI 422
           R +Y L K  AR HIL+GL IA  N+DEV+ +IR      D K  LM RF L++ QA AI
Sbjct: 358 RTRYDLRKAEARAHILEGLRIALDNIDEVVALIRASKTPQDAKDALMGRFTLSEAQAQAI 417

Query: 423 LDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADKFGDDRR 482
           LD +L+ L  LE  K+  E +EL K+ +    +L +   L +++++EI    D F   RR
Sbjct: 418 LDMRLQRLTNLEHEKLIEEYNELLKKIEFFRSVLENPEVLRSVIREEIGELRDTFATKRR 477

Query: 483 SPLVEREEAKALTERDLMPSEAITVVLSEKGWIRHAKGHDVDCQSLNYK-------AGDN 535
           + ++E EE   +   DL+P E + + LS +G+I+     +   Q    K       + D+
Sbjct: 478 TEVLE-EELDGIDIEDLIPDEDVVITLSRRGYIKRTTLDNYQQQRRGGKGIAGVHTSEDD 536

Query: 536 YLTHACGKSNQQAVFLGSD-GRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQVVMGE 594
           ++      +N Q + L ++ GR + ++ H +P               A+G  I  +V  +
Sbjct: 537 FVQDFLTTTNHQYLLLFTNHGRMHQIKVHRVPEGS----------RTAKGVHIANLVQLD 586

Query: 595 EDQL 598
           +D+L
Sbjct: 587 KDEL 590



 Score = 32.7 bits (73), Expect = 8e-05
 Identities = 34/151 (22%), Positives = 64/151 (42%), Gaps = 23/151 (15%)

Query: 583 EGTTIRQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIA 642
           +G  I  ++  E+  + L  S  GY      D+   + R GK +  +  + +      + 
Sbjct: 486 DGIDIEDLIPDEDVVITL--SRRGYIKRTTLDNYQQQRRGGKGIAGVHTSEDDFVQDFLT 543

Query: 643 DLDNDEILAITNQGRMLLFPIKDLPQLSK-GKGNKIINIPAAKAKTREEVLSNLMVLPQG 701
             ++  +L  TN GRM    +  +P+ S+  KG  I N+       ++E+++N++ + + 
Sbjct: 544 TTNHQYLLLFTNHGRMHQIKVHRVPEGSRTAKGVHIANLVQL---DKDELVTNVLTVREF 600

Query: 702 A-----------------SITLYAGKRKLGL 715
           A                 S +LYA  RK GL
Sbjct: 601 AEDRYFLFVTRRGMVKRSSASLYAKCRKTGL 631