Pairwise Alignments

Query, 761 a.a., DNA topoisomerase IV subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 919 a.a., DNA gyrase, A subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  380 bits (977), Expect = e-109
 Identities = 258/716 (36%), Positives = 394/716 (55%), Gaps = 66/716 (9%)

Query: 20  EDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKSARTVGDVLGKY 79
           +++YL+Y+M VI+ RALP + DGLKPV RR+++AMSEL    +  YKKSAR VGDV+GKY
Sbjct: 18  KNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKSARVVGDVIGKY 77

Query: 80  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTEAKLSKFAEILLS 139
           HPHGDSA Y+ +V MAQPFS RY LVDGQGN+G+ D   S AAMRYTE ++ K A  LL+
Sbjct: 78  HPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDG-DSAAAMRYTEIRMDKLAHQLLA 136

Query: 140 ELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPPHNVREVADATIH 199
           +L + TVD+ PN+DGT Q P +LP R+P++L+NG +GIAVGMAT+IPPHN+ EV    + 
Sbjct: 137 DLEKETVDYVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATNIPPHNLTEVVKGCLA 196

Query: 200 LIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMRAVWCKEGSD--- 256
           LI +P   +  LM Y+ GPDFPT A II     +   Y++GRG   MRA+   E  +   
Sbjct: 197 LIADPALSIEQLMDYIPGPDFPT-AAIINGRKGIIDAYKTGRGRAIMRALAEVETEENGR 255

Query: 257 --IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRIVIVPRSNRVDCD 314
             I++T +P+QV+ A+L+E+IA  ++ KKL  +  LRDESD +   RIVI  +   V  +
Sbjct: 256 ERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDG-MRIVIEIKRGEVG-E 313

Query: 315 LLMNHLFASTDLEKSFRVNLNMIGLDN-RPQVKGLVQILSEWISFRRETVRSRLQYRLDK 373
           +++N+L+A T ++ SF   +NM+ L N +P++  L ++L  +I  RRE V  R  + L K
Sbjct: 314 VVLNNLYAQTQMQCSF--GINMVALTNGQPKLFNLKEMLECFILHRREVVTRRTVFELRK 371

Query: 374 VLARLHILQGLLIAYLNLDEVIEIIRNEDDP---KAVLMAR------------------- 411
              R HIL+ L +A  N+D +I +I+    P   K  L+ +                   
Sbjct: 372 ARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWALGHVQGMLEKAGDDAA 431

Query: 412 ---------------FDLTDIQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELL 456
                          + LT+ QA AIL+ +L  L  LE  KI  E +EL +    L  +L
Sbjct: 432 RPEWLEPEYGIRDGLYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEFIAGLLFIL 491

Query: 457 GSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAITVVLSEKGWIR 516
            S  RL  ++K+E++    ++GD RR+ +   E   +L   DL+  E + V LS  G+ +
Sbjct: 492 RSPERLMEVIKEELEEILAEYGDARRTVINANEIDMSL--EDLINEEDVVVTLSHLGYAK 549

Query: 517 HAKGHDVDCQSLNYKA-------GDNYLTHACGKSNQQAVFLGSD-GRSYSLESHTLP-- 566
           +    D   Q    K         ++++      +    +   SD G+ Y L+ + LP  
Sbjct: 550 YQPLSDYQAQRRGGKGKVATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQLPLA 609

Query: 567 SARGQGEPITGRLNVAEG---TTIRQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSG 623
           S   +G PI   L +A+G   T I  V    ED+  ++ +  G           +   +G
Sbjct: 610 SRTSRGRPIVNLLPLADGERITAILPVREYAEDKYIIMATSNGTVKKTALTAYSNPRANG 669

Query: 624 KALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLSKGKGNKIIN 679
              +NL +  +++   +     +DEI+  +N+G+++ F   +   +    GN +++
Sbjct: 670 IIAVNLKDGDQLIGVDITN--GDDEIMLFSNEGKVVRFKEGEEVAVLDENGNPVLD 723



 Score = 32.3 bits (72), Expect = 1e-04
 Identities = 22/96 (22%), Positives = 49/96 (51%), Gaps = 5/96 (5%)

Query: 570 GQGEPITGRLNVAEGTTIRQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINL 629
           G+G      + + EG  +  +++ ++D   L  ++ GYG   +  +  SK+R+ K ++++
Sbjct: 739 GRGATGVRGIKLEEGQRVVSLIVPKDDGAILTVTENGYGKRTELSEYPSKSRATKGVVSI 798

Query: 630 ---PENSEVMTPQVIADLDNDEILAITNQGRMLLFP 662
                N  V+    +    NDEI+ I+++G ++  P
Sbjct: 799 KVSERNGAVVGAVQVG--GNDEIMLISDKGTLVRTP 832