Pairwise Alignments

Query, 408 a.a., type IV pilin assembly protein PilC from Vibrio cholerae E7946 ATCC 55056

Subject, 400 a.a., type II secretion system protein from Pseudomonas syringae pv. syringae B728a

 Score =  189 bits (479), Expect = 2e-52
 Identities = 110/396 (27%), Positives = 205/396 (51%), Gaps = 3/396 (0%)

Query: 12  YRWKGINSNGKKVSGQMLAISEIEVRDKLKDQHIQIKKLKKGSVSLLARL--THRVKSKD 69
           ++++ +++ G   +G + A  +      L+ + + + ++    +  L R   +  +    
Sbjct: 4   FKYRALDAQGAPQNGTLEARDQDAAIAALQKRGLMVLQVDAAGLGGLRRALGSGLLNGAA 63

Query: 70  ITILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAMRTASA 129
           +   T+QLAT+L  G P+ ++L ++     + + K+++ +I + V+AG PLS A+    +
Sbjct: 64  LVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEEGS 123

Query: 130 HFDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVALGVSYL 189
            F  LY+ +V  GE  G L     +L+ Y E+S+ LR +VI ALIYP+ +V+  LG   L
Sbjct: 124 QFSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALIYPAFLVVGVLGSLAL 183

Query: 190 MLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFIAIAAAIFGLKALRKNSF 249
           +L  V+P+F  +FK  G  +P  T+ +L L  ++  Y L     + A I+G+ A+R    
Sbjct: 184 LLAYVVPQFVPIFKDLGVPIPLITEVILNLGEFLSDYGLAVLAGLIALIWGM-AIRMRDP 242

Query: 250 QIRLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAKTSGNVHFET 309
           Q R +  R  L   +IG +L +   A+ +RTL T    G+ +L +L    +   N   + 
Sbjct: 243 QRRERRDRRLLGIRVIGPLLQRIEAARLTRTLGTLLTNGVALLQALVIARQVCTNRALQA 302

Query: 310 AINEVYRDTAAGMPMYIAMRNTEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNT 369
            + +       G  +  A       P++ LQM+ +GE++G+LD ML KVA +++ E    
Sbjct: 303 QVEQAAESVKGGGTLASAFGAQPLLPDLALQMIEVGEQAGELDTMLMKVADVFDVEAKRG 362

Query: 370 VDNLGKILEPLIIVFLGTVVGGLVVAMYLPIFNLMS 405
           +D +   L P + V +  +V  +++A+ LP+ +L S
Sbjct: 363 IDRMLAALVPALTVVMAGMVAVIMLAIMLPLMSLTS 398