Pairwise Alignments

Query, 408 a.a., type IV pilin assembly protein PilC from Vibrio cholerae E7946 ATCC 55056

Subject, 405 a.a., type II secretion system protein from Pseudomonas syringae pv. syringae B728a

 Score =  329 bits (843), Expect = 1e-94
 Identities = 169/396 (42%), Positives = 262/396 (66%), Gaps = 1/396 (0%)

Query: 12  YRWKGINSNGKKVSGQMLAISEIEVRDKLKDQHIQIKKLKKGSVSLLARLTHRVKSKDIT 71
           Y W+G++  G K SG++   +   V+ +L+ Q I   K++K SVS+  +   ++K  DI 
Sbjct: 11  YTWEGVDKKGTKTSGELSGHNLALVKAQLRKQGINPTKVRKKSVSIFGK-GKKIKPLDIA 69

Query: 72  ILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAMRTASAHF 131
             +RQ+ATM+  GVP++Q+  ++ +      M++++  + + V AG   + A+R    +F
Sbjct: 70  FFSRQMATMMKAGVPLLQSFDIISEGAENPNMRALVGSLKQEVSAGNSFATALRQKPEYF 129

Query: 132 DTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVALGVSYLML 191
           D L+ +LV+ GE +G L  + +R+A+Y+EK+E+L+AK+ KA+ YP  V++VAL VS ++L
Sbjct: 130 DDLFCNLVDAGEQAGALESLLDRVASYKEKTEKLKAKIKKAMTYPIAVLIVALIVSGILL 189

Query: 192 TMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFIAIAAAIFGLKALRKNSFQI 251
             V+P+F+S+F  FGA+LP FT  V+ LS  VQ + L        + F  K   K S + 
Sbjct: 190 IKVVPQFQSVFASFGAQLPTFTLMVIGLSDVVQKWWLAIVGLFFVSFFIFKRAYKQSQKF 249

Query: 252 RLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAKTSGNVHFETAI 311
           R    RL LK PIIG ++ K+S+A+++RTLAT+FAAG+P++ +L + A  +GNV F+ A+
Sbjct: 250 RDSLDRLLLKVPIIGPLIFKSSVARYARTLATTFAAGVPLVEALDSVAGATGNVVFKNAV 309

Query: 312 NEVYRDTAAGMPMYIAMRNTEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVD 371
            +V +D + GM +  +MR+T  FP + +QM  IGEESG LD ML+KVAT YE EVDN VD
Sbjct: 310 IKVKQDVSTGMQLNFSMRSTGVFPSLAIQMTAIGEESGALDTMLDKVATYYEDEVDNMVD 369

Query: 372 NLGKILEPLIIVFLGTVVGGLVVAMYLPIFNLMSVL 407
           NL  ++EP+I+ FLG +VGGLV+AMYLPIF L +V+
Sbjct: 370 NLTSLMEPMIMAFLGVIVGGLVIAMYLPIFQLGNVV 405