Pairwise Alignments

Query, 408 a.a., type IV pilin assembly protein PilC from Vibrio cholerae E7946 ATCC 55056

Subject, 410 a.a., fimbrial assembly protein PilC-like from Synechococcus elongatus PCC 7942

 Score =  229 bits (583), Expect = 1e-64
 Identities = 128/349 (36%), Positives = 200/349 (57%), Gaps = 5/349 (1%)

Query: 58  LARLTHRVKSKDITILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAG 117
           L   T +V  KD+ + +RQL++++  GVPIV+AL L+ +  R  +++  L QI   V+ G
Sbjct: 58  LEEATSKVTVKDMALFSRQLSSLVDAGVPIVRALGLLTEQTRNPKLRKTLKQINIDVQEG 117

Query: 118 TPLSKAMRTASAHFDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPS 177
             LS +MR     FD LYV +++ GE  G L +V  RL+   E   +LR ++  A+ YP 
Sbjct: 118 LNLSDSMRKFPKVFDGLYVAMIQAGETGGVLDDVLNRLSKLLEDMSRLRNQMKSAMTYPM 177

Query: 178 MVVLVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFIAIAAA 237
            V ++A+ V   M   +IP F  +F+  GAELP FT  +L +S  ++    W F  I   
Sbjct: 178 AVFVIAILVFLGMTIFIIPTFAGIFEDQGAELPGFTLLLLSISQLLRTPIFWGFFLIF-- 235

Query: 238 IFGLKALRKNSFQI---RLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILAS 294
           +FG   + K  +     RL    L L+ P++G ++ KA+ A+F RT  +   AG+PI+ +
Sbjct: 236 LFGSIFVFKQYYSTPPGRLSVDNLVLRLPVLGEMIQKAATARFCRTFGSLTRAGVPIMTA 295

Query: 295 LKTTAKTSGNVHFETAINEVYRDTAAGMPMYIAMRNTEAFPEMVLQMVMIGEESGQLDDM 354
           L+    T+GN     +I+    +   G  M +A+     FP M L M+ IGEE+G+LD M
Sbjct: 296 LEIVRDTAGNQAIARSIDAARMEVQTGGMMSVALSRYRVFPLMALSMITIGEETGELDTM 355

Query: 355 LNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPIFNL 403
           +NKVA  YE EV+  V  L  +LEP++IV +G +VG +++AMYLP+F++
Sbjct: 356 VNKVADFYEDEVEQAVKGLTSLLEPIMIVLVGGIVGSILLAMYLPMFSI 404