Pairwise Alignments

Query, 408 a.a., type IV pilin assembly protein PilC from Vibrio cholerae E7946 ATCC 55056

Subject, 419 a.a., type IV pilus biogenesis protein PilC (RefSeq) from Shewanella amazonensis SB2B

 Score =  378 bits (970), Expect = e-109
 Identities = 188/409 (45%), Positives = 279/409 (68%), Gaps = 2/409 (0%)

Query: 2   KATQTLPLK--NYRWKGINSNGKKVSGQMLAISEIEVRDKLKDQHIQIKKLKKGSVSLLA 59
           K TQ L  K  N+ WKG+N +GKK SG++   S  E++  LK+Q I  K ++K S  L  
Sbjct: 11  KQTQKLAPKVYNFEWKGLNRDGKKSSGELRGASVAEIKTLLKNQGINPKVVRKKSDGLFG 70

Query: 60  RLTHRVKSKDITILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTP 119
               ++ + DI ++TRQ+ATML  GVP+V  ++++G  H K +M+ +L  I   ++AG P
Sbjct: 71  ASNKKINAMDIAMVTRQIATMLMAGVPLVTTIEILGKGHEKPKMRELLGTILNDIQAGIP 130

Query: 120 LSKAMRTASAHFDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMV 179
           LS A+R    +FD LYVDLV  GE SG+L  VF+R+ATYREK+E L++K+ KA+ YP+ V
Sbjct: 131 LSDALRPHRIYFDDLYVDLVAAGEHSGSLDTVFDRIATYREKAEALKSKIKKAMFYPAAV 190

Query: 180 VLVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFIAIAAAIF 239
           V+VA+ V+ L+L  V+P+FE +F  FGAELP FTQ ++ +S ++Q+   +   AI  +I+
Sbjct: 191 VVVAIAVTTLLLLFVVPQFEEIFTSFGAELPAFTQLIINISRFLQSSWYFFLTAIVGSIW 250

Query: 240 GLKALRKNSFQIRLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTA 299
                 +NS  +R +     LK P+IG +L KA++A+F+RTLAT+FAAG+P++  L++ A
Sbjct: 251 LYVRAHRNSQAVRDRQDEFVLKIPVIGEILHKAAMARFARTLATTFAAGVPLIDGLESAA 310

Query: 300 KTSGNVHFETAINEVYRDTAAGMPMYIAMRNTEAFPEMVLQMVMIGEESGQLDDMLNKVA 359
             SGN  +  A+  +  +  AGM M +AMR    FP+M++QMVMIGEESG LD+MLNK+A
Sbjct: 311 GASGNAVYRKALLRIRTEVMAGMQMNVAMRTVNLFPDMLIQMVMIGEESGSLDNMLNKIA 370

Query: 360 TIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPIFNLMSVLG 408
            IYE +VD+ VD L  ++EP+++V +GT+VGGL+V MYLPIF + +V+G
Sbjct: 371 NIYEMQVDDAVDGLSSLIEPIMMVVIGTLVGGLIVGMYLPIFQMGNVVG 419