Pairwise Alignments

Query, 408 a.a., type IV pilin assembly protein PilC from Vibrio cholerae E7946 ATCC 55056

Subject, 407 a.a., general secretion pathway protein F (RefSeq) from Shewanella amazonensis SB2B

 Score =  212 bits (539), Expect = 2e-59
 Identities = 120/404 (29%), Positives = 217/404 (53%), Gaps = 8/404 (1%)

Query: 12  YRWKGINSNGKKVSGQMLAISEIEVRDKLKDQHIQ-------IKKLKKGSVSLLARLTHR 64
           + +K ++  GK+  G + A S    R +L+D  +        ++K  K      +     
Sbjct: 4   FEYKALDGKGKQQKGVIEADSARHARSQLRDMRLMPLEIEPVVEKETKAKSVGFSPFKRG 63

Query: 65  VKSKDITILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAM 124
           +   ++ ++TRQ+AT++ +G+P+ +ALK VG    K  + S++  +   V  G  L+ +M
Sbjct: 64  ISVAELALITRQIATLVASGLPVEEALKAVGQQCEKDRLASMVMAVRSRVVEGYSLADSM 123

Query: 125 RTASAHFDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVAL 184
                 FD LY  +V +GE SG+L  V  RLA Y E+ +QL++K+ +A+IYP M+ LVA+
Sbjct: 124 AEFPHIFDDLYRSMVASGEKSGHLEVVLNRLADYTERRQQLKSKLTQAMIYPVMLTLVAI 183

Query: 185 GVSYLMLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFIAIAAAIFGLKAL 244
           GV  ++L  V+P+  S F+  G ELP  T+ ++  S +VQ Y L   + +  A    + L
Sbjct: 184 GVVAVLLAAVVPKVVSQFEHLGQELPATTKALMASSAFVQDYGLLIMVLVVVAFVVFQRL 243

Query: 245 RKNSFQIRLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAKTSGN 304
             N    ++K  +  L+ P++G V    + A+F+RTL+   A+ +P+L  ++   +   N
Sbjct: 244 LAND-NFKMKYHQFLLRLPVVGRVSRSINTARFARTLSILSASAVPLLDGMRIAGEVMQN 302

Query: 305 VHFETAINEVYRDTAAGMPMYIAMRNTEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEF 364
           +    A+ E       G  +  A+ NT+ FP M+L M+  GE+SGQL++ML + A   + 
Sbjct: 303 LRVREAVEEATARVREGTSLGAALTNTKLFPPMMLYMIASGEKSGQLENMLERAADNQDR 362

Query: 365 EVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPIFNLMSVLG 408
           E +  V+    + +P +++ +  VV  +V+A+  PI  + +++G
Sbjct: 363 EFEANVNLALGVFQPALVISMAAVVLFIVLAILQPILEMNNLIG 406