Pairwise Alignments

Query, 408 a.a., type IV pilin assembly protein PilC from Vibrio cholerae E7946 ATCC 55056

Subject, 406 a.a., general secretion pathway protein F (RefSeq) from Shewanella loihica PV-4

 Score =  214 bits (544), Expect = 5e-60
 Identities = 126/406 (31%), Positives = 219/406 (53%), Gaps = 15/406 (3%)

Query: 12  YRWKGINSNGKKVSGQMLAISEIEVRDKLKDQHI----------QIKKLKKGSVSLLARL 61
           + +K +N+ GK+  G + A +    R +L++  +          +  K K G  S     
Sbjct: 4   FEYKALNAQGKQQKGVVEADTARHARGQLRELRLMPLEITPVVEKEAKAKSGGFSF---- 59

Query: 62  THRVKSKDITILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLS 121
              +   ++ ++TRQ+AT++  G+P+ +ALK VG    K  + S++  +   V  G  L+
Sbjct: 60  KRGISVAELALITRQIATLVAAGLPVEEALKAVGQQCEKDRLASMVMAVRSRVVEGYSLA 119

Query: 122 KAMRTASAHFDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVL 181
            +M      FD LY  +V +GE SG+L  V  RLA Y E+ +QL+ K+ +A+IYP ++ L
Sbjct: 120 DSMAEFPHIFDDLYRAMVASGEKSGHLEVVLNRLADYTERRQQLKTKMTQAMIYPIVLTL 179

Query: 182 VALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFIAIAAAIFGL 241
           VA+ V  ++L  V+P+    F+  G ELPW TQ ++  S +V+ Y L     I A + G 
Sbjct: 180 VAISVIAILLAAVVPQVVGQFEHMGQELPWTTQFLIASSDFVRDYGLIVIGVIIALVVGA 239

Query: 242 KALRKNSFQIRLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAKT 301
           K L +++   R+K     LK P++G V    + A+F+RTL+   A+ +P+L +++  ++ 
Sbjct: 240 KQLLRSAAN-RMKYDSAILKMPVVGRVSKGLNTARFARTLSILTASSVPLLDAMRIASEV 298

Query: 302 SGNVHFETAINEVYRDTAAGMPMYIAMRNTEAFPEMVLQMVMIGEESGQLDDMLNKVATI 361
             NV    A+ E       G  +  A+ NT+ FP M+L M+  GE+SGQL+ ML + A  
Sbjct: 299 LMNVRVRAAVEEATARVREGTSLGAALANTKLFPPMMLYMITSGEKSGQLEQMLERAADN 358

Query: 362 YEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPIFNLMSVL 407
            + E ++ V+    + EP+++V +  VV  +V+A+  PI  L +++
Sbjct: 359 QDREFESNVNIALGVFEPMLVVSMAAVVLFIVLAILQPILELNNMI 404