Pairwise Alignments

Query, 408 a.a., type IV pilin assembly protein PilC from Vibrio cholerae E7946 ATCC 55056

Subject, 405 a.a., type II secretion system protein (RefSeq) from Shewanella loihica PV-4

 Score =  211 bits (536), Expect = 4e-59
 Identities = 118/400 (29%), Positives = 221/400 (55%), Gaps = 5/400 (1%)

Query: 12  YRWKGINSNGKKVSGQMLAISEIEVRDKLKDQHIQIKKLKKGSVSLLARLTHRVKSK--- 68
           Y++KG ++ G  VSG++ A ++    D+L  + +   +L +  V+    L    KSK   
Sbjct: 4   YQYKGRDAQGNAVSGRLDATTQSAAADQLLSRAVIPLELVEAKVAREFHLGSLFKSKVGL 63

Query: 69  -DITILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAMRTA 127
            ++ I TRQ+ ++  +G+PI++A+  + ++     MK  L  I++ + +G PLS AM   
Sbjct: 64  DELQIFTRQMYSLTRSGIPILRAIAGLSESSHSKRMKDALNDISEQLISGRPLSSAMNHH 123

Query: 128 SAHFDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVALGVS 187
              FD L+V ++  GE +G L + F +L+ Y E+ ++ R ++  A+ YP  V++      
Sbjct: 124 PDVFDALFVSMIHVGENTGKLEDAFIQLSGYIEREQETRRRIKAAMRYPIFVLMAVALAM 183

Query: 188 YLMLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFIAIAAAIFGLKALRKN 247
            ++  MVIP+F  +F  FGA+LPW T+ ++  S++   Y     IA+     G++    N
Sbjct: 184 VVLNIMVIPKFADLFARFGADLPWATKLLIGTSNFFVNYWYLLLIALVGCFVGIRYWH-N 242

Query: 248 SFQIRLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAKTSGNVHF 307
           + +   +  R  LK P +G+++ +++++++ R+ +   +AG+P+  +L   A    N + 
Sbjct: 243 TEKGEQQWDRWKLKIPAVGSIIERSTLSRYCRSFSMMLSAGVPMTQALSLVADAVDNAYM 302

Query: 308 ETAINEVYRDTAAGMPMYIAMRNTEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVD 367
              I  + R   +G  M      ++ F  +VLQMV +GEE+GQ+D +LN  A  YE EVD
Sbjct: 303 HDRIVAMRRGIESGESMLRVSNQSQLFTPLVLQMVAVGEETGQIDQLLNDAADFYEGEVD 362

Query: 368 NTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPIFNLMSVL 407
             + NL   LEP++I  +  +V  L + +YLP++++++V+
Sbjct: 363 YDLKNLTAKLEPILIGIVAVIVLILALGIYLPMWDMLNVV 402