Pairwise Alignments

Query, 408 a.a., type IV pilin assembly protein PilC from Vibrio cholerae E7946 ATCC 55056

Subject, 423 a.a., type IV pilus biogenesis protein PilC (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  383 bits (984), Expect = e-111
 Identities = 194/398 (48%), Positives = 281/398 (70%), Gaps = 2/398 (0%)

Query: 12  YRWKGINSNGKKVSGQMLAISEIEVRDKLKDQHIQIKKLKKGSVSLLARLTHRVKSKDIT 71
           + WKG+N +G+K SG++   S  E+R +LK Q +  K ++K S +L      ++   DI 
Sbjct: 26  FEWKGVNRDGQKTSGELRGASAAEIRSQLKSQGVNPKTVRKQSAALFKLGDPKITPMDIA 85

Query: 72  ILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAMRTASAHF 131
           ++TRQ+ATML  GVP+V  ++L+G  H K +M+ +LA I   +++G PLS A+R    +F
Sbjct: 86  MVTRQIATMLAAGVPLVTTIELLGRGHEKVKMRELLATILSEIQSGIPLSDALRPHRRYF 145

Query: 132 DTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVALGVSYLML 191
           D LYVDLV  GE SG+L  VF+R+ATYREKSE L++K+ KA+ YP+ VV+VA+ V+ L+L
Sbjct: 146 DDLYVDLVAAGEHSGSLDVVFDRIATYREKSEALKSKIKKAMFYPAAVVIVAILVTALLL 205

Query: 192 TMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFI-AIAAAIFGLKALRKNSFQ 250
             V+P+FE +FKGFGAELP FTQ VL++S  +Q+ S + F+ AI A +F      +NS  
Sbjct: 206 LFVVPQFEDIFKGFGAELPAFTQLVLQISRGLQS-SWYIFLGAIVAGVFLFVRAHRNSQI 264

Query: 251 IRLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAKTSGNVHFETA 310
           +R +     LK P IG +L K ++A+F+RTLAT+FAAG+P++  L++ A  SGN  +  A
Sbjct: 265 VRDRVDEAVLKIPAIGPILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNAVYRKA 324

Query: 311 INEVYRDTAAGMPMYIAMRNTEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTV 370
           I ++ ++  AGM M +AMR T  FP+M++QMVMIGEESG LD+MLNKV+TIYE +VD+ V
Sbjct: 325 ILKIRQEVMAGMQMNVAMRTTGLFPDMLIQMVMIGEESGSLDNMLNKVSTIYEMQVDDAV 384

Query: 371 DNLGKILEPLIIVFLGTVVGGLVVAMYLPIFNLMSVLG 408
           D L  ++EP+++V +GTVVGGL+VAMYLPIF +  V+G
Sbjct: 385 DGLSSLIEPIMMVVIGTVVGGLIVAMYLPIFQMGKVVG 422