Pairwise Alignments

Query, 408 a.a., type IV pilin assembly protein PilC from Vibrio cholerae E7946 ATCC 55056

Subject, 407 a.a., general secretion pathway protein F (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  213 bits (542), Expect = 8e-60
 Identities = 124/403 (30%), Positives = 221/403 (54%), Gaps = 8/403 (1%)

Query: 12  YRWKGINSNGKKVSGQMLAISEIEVRDKLKDQHIQ-------IKKLKKGSVSLLARLTHR 64
           + +K +++ GK++ G + A +    R +L+DQ +         +K  K   S  A     
Sbjct: 4   FEYKALDAKGKQLKGVIEADTARHARSQLRDQRLMPLDILPVTEKEAKAKSSGFALFKRG 63

Query: 65  VKSKDITILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAM 124
           +   ++ ++TRQ+AT++  G+PI ++LK VG    K  + S++  +   V  G  L+ ++
Sbjct: 64  ISVAELALITRQIATLVAAGLPIEESLKAVGQQCEKDRLASMIMAVRSRVVEGYSLADSL 123

Query: 125 RTASAHFDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVAL 184
                 FD LY  +V +GE SG+L  V  RLA Y E+ +QL++K+ +A+IYP M+ LVA+
Sbjct: 124 AEFPHIFDDLYRAMVASGEKSGHLEVVLNRLADYTERRQQLKSKLQQAMIYPIMLTLVAI 183

Query: 185 GVSYLMLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFIAIAAAIFGLKAL 244
           GV  ++L  V+P+    F+  GAELP  T+ ++  S +VQ Y L   + +   +   + L
Sbjct: 184 GVVSVLLAAVVPKVVGQFEHMGAELPATTRFLIAASDFVQNYGLLVVLVLGILLVVFQRL 243

Query: 245 RKNSFQIRLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAKTSGN 304
            K+    ++K     LK P+IG V    + A+F+RTL+   A+ +P+L  ++  ++   N
Sbjct: 244 LKSPI-FKMKFHTFLLKMPVIGRVSKGLNTARFARTLSILSASSVPLLDGMRIASEVLQN 302

Query: 305 VHFETAINEVYRDTAAGMPMYIAMRNTEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEF 364
           +    A+++       G  +  A+ NT+ FP M+L M+  GE+SGQL+DML + A   + 
Sbjct: 303 MRVRAAVDDATARVREGTSLSTALTNTKLFPAMMLYMIASGEKSGQLEDMLERAADNQDR 362

Query: 365 EVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPIFNLMSVL 407
           E ++ V     + EP+++V +  VV  +V+A+  PI  L +++
Sbjct: 363 EFESNVTLALGVFEPMLVVSMAGVVLFIVMAILQPILALNNLI 405