Pairwise Alignments

Query, 408 a.a., type IV pilin assembly protein PilC from Vibrio cholerae E7946 ATCC 55056

Subject, 401 a.a., type II secretion protein F from Klebsiella michiganensis M5al

 Score =  196 bits (499), Expect = 8e-55
 Identities = 119/399 (29%), Positives = 215/399 (53%), Gaps = 6/399 (1%)

Query: 12  YRWKGINSNGKKVSGQMLAISEIEVRDKLKDQH---IQIKKLKKGSVSLLARLTHRVKSK 68
           +R++ ++  GK   G   A S    R  L+++    + I     G     +R   R  ++
Sbjct: 4   FRYQALDEQGKPRRGVQQADSARHARQLLREKGWLALDIDPAAGGGRP--SRFMRRTSAR 61

Query: 69  DITILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAMRTAS 128
           D+ ++TRQLAT++   +P+ +AL  V     K ++K+++A +   V  G  L++AMR   
Sbjct: 62  DLALVTRQLATLVAAAIPLEKALDAVAQQSEKPQLKTLIAGVRGKVLEGHSLAEAMRGHP 121

Query: 129 AHFDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVALGVSY 188
             FD LY  +V  GE SG+L  V  RLA Y E+ +QLRA++++A+IYP ++ LVA+ V  
Sbjct: 122 GCFDALYCAMVAAGEASGHLDGVLNRLADYTEQRQQLRARLLQAMIYPIVLTLVAVSVIV 181

Query: 189 LMLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFIAIAAAIFGLKALRKNS 248
           ++L+ V+P+    F      LP+ T+ ++ +S  ++A   W  +AI   I  L+ L +  
Sbjct: 182 ILLSTVVPKVVEQFIHLKQALPFSTRLLMAMSDMLRAAGPWLLLAILLLILLLRYLLRQP 241

Query: 249 FQIRLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAKTSGNVHFE 308
            + RL   RL L+ P+IG V    + A+++RTL+   A+ +P+L +++ +A    N   +
Sbjct: 242 AK-RLAWHRLLLRLPLIGRVARSVNSARYARTLSILNASAVPLLLAMRISADVLSNAWAK 300

Query: 309 TAINEVYRDTAAGMPMYIAMRNTEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDN 368
             +         G+ ++ A+  T+ FP M+  MV  GE SG+L+ ML + A   + ++  
Sbjct: 301 RQLEAASDAVREGVSLHRALEMTQLFPPMMRYMVASGERSGELNSMLERAADNQDRDLSA 360

Query: 369 TVDNLGKILEPLIIVFLGTVVGGLVVAMYLPIFNLMSVL 407
            +     + EPL++V +  +V  +V+A+  PI  L +++
Sbjct: 361 QIQLALSLFEPLLVVAMAGMVLFIVLAILQPILQLNTLM 399