Pairwise Alignments

Query, 408 a.a., type IV pilin assembly protein PilC from Vibrio cholerae E7946 ATCC 55056

Subject, 357 a.a., type II secretion system protein F from Herbaspirillum seropedicae SmR1

 Score = 55.1 bits (131), Expect = 3e-12
 Identities = 42/175 (24%), Positives = 82/175 (46%), Gaps = 17/175 (9%)

Query: 73  LTRQLATMLTTGVPIVQALKLVGDNHR------KAEMKSILAQITKSVEAGTPLSKAMRT 126
           L R+++ ML+ G+P+++ L+ + D         K  +  IL    +SV+ G  LS+A+  
Sbjct: 22  LYRKMSKMLSNGLPLLKVLEELRDRESHYGKKPKEPLAIILDDCRRSVQNGRLLSEALEG 81

Query: 127 ASAHFDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVALGV 186
            +   + +   ++  GE SG L      +    +  +++ + ++  + YP  ++ + L  
Sbjct: 82  WAPRAEQM---ILMAGEQSGKLEGTLVAVVNVVQARKKIHSVIVGGMAYPLAILALVLSY 138

Query: 187 SYLMLTMVIPEFESMF---KGFGAELPWFTQQVLKLSHWVQAYSLWAFIAIAAAI 238
            YL    VIP+F  M    K  GA      + +  +S WVQ +  +  +A+A  I
Sbjct: 139 VYLFGVKVIPQFTLMMDPAKWHGA-----ARSLYLMSLWVQQWMGYTLVALALLI 188



 Score = 24.6 bits (52), Expect = 0.005
 Identities = 19/70 (27%), Positives = 30/70 (42%)

Query: 335 PEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVV 394
           P     ++M GE+SG+L+  L  V  + +         +G +  PL I+ L      L  
Sbjct: 84  PRAEQMILMAGEQSGKLEGTLVAVVNVVQARKKIHSVIVGGMAYPLAILALVLSYVYLFG 143

Query: 395 AMYLPIFNLM 404
              +P F LM
Sbjct: 144 VKVIPQFTLM 153