Pairwise Alignments

Query, 408 a.a., type IV pilin assembly protein PilC from Vibrio cholerae E7946 ATCC 55056

Subject, 403 a.a., type II secretion system inner membrane protein GspF from Ralstonia sp. UNC404CL21Col

 Score =  169 bits (429), Expect = 1e-46
 Identities = 119/400 (29%), Positives = 203/400 (50%), Gaps = 13/400 (3%)

Query: 12  YRWKGINSNGKKVSGQMLAISEIEVRDKLKDQHIQ--------IKKLKKGSVSLLARLTH 63
           +R++  ++ GK   G + A S  + R  L+ + +          +  K+G  S   RL+ 
Sbjct: 4   FRYEAADATGKTDKGVIEADSARQARTLLRARGLTPLLVDALGAQATKRGGSSFGKRLS- 62

Query: 64  RVKSKDITILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKA 123
              +++  ++TRQLA++L  G+P+ +AL  + D   +A +  +LA I   V  G+ LS A
Sbjct: 63  ---AQENALVTRQLASLLVAGLPLDEALAALADQAERAYVGELLAAIRAEVVGGSSLSVA 119

Query: 124 MRTASAHFDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVA 183
           +      F  +Y  LV  GE SGNL  V  RLA Y E    L +K+  A  YP++V +VA
Sbjct: 120 LAQHPKDFPDIYRALVSAGEHSGNLGLVLSRLADYIESRNALTSKIKLAFTYPAIVTVVA 179

Query: 184 LGVSYLMLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFIAIAAAIFGLKA 243
             +   +L+ V+P+  S+F     +LP  T  +L LS +V+ +   A I +AA    ++ 
Sbjct: 180 FAIVIFLLSYVVPQVVSVFANTKQKLPTLTIIMLWLSDFVRNWGWLAAIVLAAIGVLIRN 239

Query: 244 LRKNSFQIRLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAKTSG 303
           L K    +RL   +  L  P+ G ++   + A+F+ TLA   +AG+PIL  L+   +T  
Sbjct: 240 LLKQP-ALRLSWHKWLLTAPLFGKLVRGYNTARFASTLAILTSAGVPILRGLQAAGETLN 298

Query: 304 NVHFETAINEVYRDTAAGMPMYIAMRNTEAFPEMVLQMVMIGEESGQLDDMLNKVATIYE 363
           NV  +T + +       G  +  A+     FP +++ ++  GE +G L  ML + A    
Sbjct: 299 NVALKTNVEDASTRVREGTSLARALAAQNQFPPVLVHLIRSGEATGNLPAMLERAAQGEA 358

Query: 364 FEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPIFNL 403
            E++     L  +LEP +I+ +G VV  +V+A+ +PI  +
Sbjct: 359 QELERRTLFLTGLLEPALILTMGVVVLLIVLAVLMPIIEI 398