Pairwise Alignments

Query, 408 a.a., type IV pilin assembly protein PilC from Vibrio cholerae E7946 ATCC 55056

Subject, 406 a.a., type II secretion system protein (RefSeq) from Shewanella sp. ANA-3

 Score =  207 bits (528), Expect = 3e-58
 Identities = 123/401 (30%), Positives = 226/401 (56%), Gaps = 7/401 (1%)

Query: 12  YRWKGINSNGKKVSGQMLAISEIEVRDKLKDQHI---QIKKLKKGSVSLLARLTHR-VKS 67
           Y+++G +  G+ V+GQ+ A SE    D L  + I   ++K  K+     LA+L  R V  
Sbjct: 4   YQYRGRSGQGQAVTGQLDAASEGAAADMLLARGIIPLEVKVAKETKSFTLAQLFKRKVGL 63

Query: 68  KDITILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAMRTA 127
            ++ I TRQ+ ++  +G+PI++A+  + +      MK  L  I++ + AG PLS AM   
Sbjct: 64  DELQIFTRQMYSLTRSGIPILRAIAGLSETAHSQRMKDALNDISEQLTAGRPLSSAMNQH 123

Query: 128 SAHFDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVALGVS 187
              FD+L+V +V  GE +G L + F +L+ Y E+ ++ R ++  A+ YP + VL+A+ ++
Sbjct: 124 PDVFDSLFVSMVHVGENTGKLEDAFIQLSGYIEREQETRRRIKAAMRYP-IFVLIAIALA 182

Query: 188 YLMLT-MVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFIAIAAAIFGLKALRK 246
            ++L  MVIP+F  MF  FGA+LPW T+ ++  S+    Y     + +   I G++    
Sbjct: 183 MVILNIMVIPKFAEMFARFGADLPWATKVLIGTSNLFVNYWPLMLVILLGTIIGIRYWH- 241

Query: 247 NSFQIRLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAKTSGNVH 306
           ++ +   +  +  L  P +G+++ +++++++ R+ +   +AG+P+  +L   A    N +
Sbjct: 242 HTEKGEKQWDKWKLHIPAVGSIIERSTLSRYCRSFSMMLSAGVPMTQALSLVADAVDNAY 301

Query: 307 FETAINEVYRDTAAGMPMYIAMRNTEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEV 366
               I  + R   +G  M      ++ F  +VLQMV +GEE+GQ+D +LN  A  YE EV
Sbjct: 302 MHDKIVGMRRGIESGESMLRVSNQSKLFTPLVLQMVAVGEETGQIDQLLNDAADFYEGEV 361

Query: 367 DNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPIFNLMSVL 407
           D  + NL   LEP++I  +  +V  L + +YLP++++++V+
Sbjct: 362 DYDLKNLTAKLEPILIGIVAAIVLVLALGIYLPMWDMLNVV 402