Pairwise Alignments

Query, 408 a.a., type IV pilin assembly protein PilC from Vibrio cholerae E7946 ATCC 55056

Subject, 423 a.a., type II secretion system protein (RefSeq) from Shewanella sp. ANA-3

 Score =  382 bits (981), Expect = e-110
 Identities = 193/398 (48%), Positives = 279/398 (70%), Gaps = 2/398 (0%)

Query: 12  YRWKGINSNGKKVSGQMLAISEIEVRDKLKDQHIQIKKLKKGSVSLLARLTHRVKSKDIT 71
           + WKG+N +G+K SG++   S  E+R +LK Q +  K ++K S +L      ++   DI 
Sbjct: 26  FEWKGLNRDGQKTSGELRGASAAEIRSQLKSQGVNPKTVRKQSAALFKLGDAKISPMDIA 85

Query: 72  ILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAMRTASAHF 131
           ++TRQ+ATML  GVP+V  ++L+G  H KA+M+ +L  I   +++G PLS ++R    +F
Sbjct: 86  MITRQIATMLAAGVPLVTTIELLGRGHEKAKMRELLGSILSEIQSGIPLSDSLRPHRRYF 145

Query: 132 DTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVALGVSYLML 191
           D LYVDLV  GE SG+L  VF+R+ATYREKSE L++K+ KA+ YP+ VV+VA+ V+ L+L
Sbjct: 146 DDLYVDLVAAGEHSGSLDVVFDRIATYREKSEALKSKIKKAMFYPAAVVVVAILVTTLLL 205

Query: 192 TMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFI-AIAAAIFGLKALRKNSFQ 250
             V+P+FE +FKGFGAELP FTQ VL +S  +Q+ S + F+ AI A +F      +NS  
Sbjct: 206 LFVVPQFEEIFKGFGAELPAFTQLVLHISRGLQS-SWYIFLGAIVAGVFLFVRAHRNSQM 264

Query: 251 IRLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAKTSGNVHFETA 310
           +R +     LK P IG +L K ++A+F+RTLAT+FAAG+P++  L++ A  SGN  +  A
Sbjct: 265 VRDRVDEAVLKIPAIGPILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNAVYRKA 324

Query: 311 INEVYRDTAAGMPMYIAMRNTEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTV 370
           I ++ ++  AGM M +AMR T  FP+M++QMVMIGEESG LD+MLNKVA IYE +VD+ V
Sbjct: 325 ILKIRQEVMAGMQMNVAMRTTGLFPDMLIQMVMIGEESGSLDNMLNKVANIYEMQVDDAV 384

Query: 371 DNLGKILEPLIIVFLGTVVGGLVVAMYLPIFNLMSVLG 408
           D L  ++EP+++V +GTVVGGL+VAMYLPIF +  V+G
Sbjct: 385 DGLSSLIEPIMMVVIGTVVGGLIVAMYLPIFQMGKVVG 422