Pairwise Alignments

Query, 408 a.a., type IV pilin assembly protein PilC from Vibrio cholerae E7946 ATCC 55056

Subject, 407 a.a., general secretion pathway protein F (RefSeq) from Shewanella sp. ANA-3

 Score =  214 bits (545), Expect = 4e-60
 Identities = 124/403 (30%), Positives = 223/403 (55%), Gaps = 8/403 (1%)

Query: 12  YRWKGINSNGKKVSGQMLAISEIEVRDKLKDQHIQ-------IKKLKKGSVSLLARLTHR 64
           + +K +++ GK++ G + A +    R +L+DQ +         +K  K   +  +     
Sbjct: 4   FEYKALDAKGKQLKGVIEADTARHARSQLRDQRMMPLEILPVTEKEAKSKGTGFSPFKRG 63

Query: 65  VKSKDITILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAM 124
           +   ++ ++TRQ+AT++  G+PI + LK VG    KA + S++  +   V  G  L+ ++
Sbjct: 64  ISVAELALITRQIATLVAAGLPIEECLKAVGQQCEKARLASMIMAVRSRVVEGYSLADSL 123

Query: 125 RTASAHFDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVAL 184
                 FD LY  +V +GE SG+L  V  RLA Y E+ +QL++K+ +A+IYP M+ +VA+
Sbjct: 124 AEFPHIFDDLYRAMVASGEKSGHLEVVLNRLADYTERRQQLKSKLQQAMIYPIMLTIVAI 183

Query: 185 GVSYLMLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFIAIAAAIFGLKAL 244
           GV  ++L  V+P+    F+  GAELP  T+ ++  S +VQ Y L+  +AI   +   + L
Sbjct: 184 GVVSVLLAAVVPKVVGQFEHMGAELPATTRFLIAASDFVQHYGLFVILAIGILLVVFQRL 243

Query: 245 RKNSFQIRLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAKTSGN 304
            K+    ++K     LK P+IG V    + A+F+RTL+   A+ +P+L  ++  ++   N
Sbjct: 244 LKSPI-FKMKYHTFLLKMPVIGRVSKGLNTARFARTLSILSASSVPLLDGMRIASEVLQN 302

Query: 305 VHFETAINEVYRDTAAGMPMYIAMRNTEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEF 364
           V    A+++       G  +  A+ NT+ FP M+L M+  GE+SGQL++ML + A   + 
Sbjct: 303 VRVRAAVDDATARVREGTSLGAALTNTKLFPAMMLYMIASGEKSGQLEEMLERAADNQDR 362

Query: 365 EVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPIFNLMSVL 407
           E ++ V     + EP+++V +  VV  +V+A+  PI  L +++
Sbjct: 363 EFESNVTLALGVFEPMLVVSMAGVVLFIVMAILQPILALNNLI 405